RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SH3BGRL3Q9H299 93 aa17.02■□□□□ 0.31
CCDC88B-202ENST00000356786 TNFRSF1AP19438 455 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 GABRA6Q16445 453 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 TMEM222Q9H0R3 208 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 CARHSP1Q9Y2V2 147 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 DNASE2O00115 360 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 ISLRO14498 428 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 RHBDD2Q6NTF9 364 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 TMEM92Q6UXU6 159 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 LINC00469Q8N7U9 141 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 C5orf17Q8NAS9 161 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 OR1B1Q8NGR6 318 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 PRRG2O14669 202 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 CD74P04233 296 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 LYRM7Q5U5X0 104 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 CYB5R2Q6BCY4 276 aa17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 SF3B5Q9BWJ5 86 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-202ENST00000356786 KIF13BQ9NQT8 1826 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 RGPD4Q7Z3J3 1758 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 OOEPA6NGQ2 149 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 GLULP15104 373 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 MPLP40238 635 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 CRYBA2P53672 197 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 RBM11P57052 281 aaKnown RBP17■□□□□ 0.31
CCDC88B-202ENST00000356786 SPATA45Q537H7 98 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 LRRC10Q5BKY1 277 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 ADTRPQ96IZ2 230 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 SEBOXQ9HB31 216 aaPredicted RBP17■□□□□ 0.31
CCDC88B-202ENST00000356786 POU2F2P09086 479 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF137PP52743 207 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 LYZP61626 148 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 HES3Q5TGS1 186 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 TEPPQ6URK8 271 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 WFIKKN1Q96NZ8 548 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 OR2H1Q9GZK4 316 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 HSPB8Q9UJY1 196 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 IGSF23A1L1A6 192 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 FOXS1O43638 330 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 LYZL6O75951 148 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 SOD3P08294 240 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 NPY1RP25929 384 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 CD82P27701 267 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 TMEM116Q8NCL8 245 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 OR2V2Q96R30 315 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 OR4C12Q96R67 309 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 PIPOXQ9P0Z9 390 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 J3QT63 122 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 HIST1H1EP10412 219 aaKnown RBP17■□□□□ 0.31
CCDC88B-202ENST00000356786 HYAL1Q12794 435 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 UQCR10Q9UDW1 63 aa17■□□□□ 0.31
CCDC88B-202ENST00000356786 SNRNP200O75643 2136 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 C9orf40Q8IXQ3 194 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 OR8A1Q8NGG7 326 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 RHBDL1O75783 438 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 MT-ND6P03923 174 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 NGFRP08138 427 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 MNX1P50219 401 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 C2orf68Q2NKX9 166 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 CD1BP29016 333 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 SLC23A3Q6PIS1 610 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 IL19Q9UHD0 177 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 RPL7P18124 248 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 FDX2Q6P4F2 183 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 SPEM1Q8N4L4 309 aa16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 PARD6GQ9BYG4 376 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-202ENST00000356786 MSGN1A6NI15 193 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 GLIPR1P48060 266 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF83P51522 516 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 RIGQ13278 110 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF766Q5HY98 468 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 FLYWCH2Q96CP2 140 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 CA11O75493 328 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 OR5A2Q8NGI9 324 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 OR52M1Q8NGK5 317 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF385AQ96PM9 386 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 P2RX4Q99571 388 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 ZBTB34Q8NCN2 500 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 OR2I1PQ8NGU4 316 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 TINAGQ9UJW2 476 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 ISG15P05161 165 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 IL11RAQ14626 422 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 SCGB1D4Q6XE38 83 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 CARFQ8N187 725 aa16.98■□□□□ 0.31
CCDC88B-202ENST00000356786 GVINP1Q7Z2Y8 2422 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 RBBP6Q7Z6E9 1792 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 IGLV1-36A0A0B4J1U3 117 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 A0A0G2JK05 382 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF708P17019 499 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 LINC01590Q5TEZ4 76 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 TMEM140Q9NV12 185 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 RNF122Q9H9V4 155 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 PCOLCE2Q9UKZ9 415 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 GAGE10A6NGK3 116 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 GZMHP20718 246 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 SSX8Q7RTT4 187 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 OR8I2Q8N0Y5 310 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 TAF15Q92804 592 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 GMPPAQ96IJ6 420 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 TMEM38BQ9NVV0 291 aa16.97■□□□□ 0.31
CCDC88B-202ENST00000356786 A0A0U1RQV5 110 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms