RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZXDAP98168 799 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 UBE2V1Q13404 147 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 PSG5Q15238 335 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM106BQ9NUM4 274 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 USF3Q68DE3 2245 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 PTGESO14684 152 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 HYAL3O43820 417 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-203ENST00000353578 KLRB1Q12918 225 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 TP53INP2Q8IXH6 220 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 RDH5Q92781 318 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 CHST5Q9GZS9 411 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 SLC6A13Q9NSD5 602 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 LGALS3P17931 250 aaKnown RBP11.12□□□□□ -0.63
COL6A3-203ENST00000353578 LSM6P62312 80 aaKnown RBP11.12□□□□□ -0.63
COL6A3-203ENST00000353578 MRPL32Q9BYC8 188 aaKnown RBP11.12□□□□□ -0.63
COL6A3-203ENST00000353578 ACSM6Q6P461 480 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 MORN3Q6PF18 240 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-203ENST00000353578 TRAV30A0A087WSZ9 112 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 A0A1W2PR48 441 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 PLCE1Q9P212 2302 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 CEACAM6P40199 344 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 EDDM3AQ14507 147 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 LHFPL4Q7Z7J7 247 aa11.12□□□□□ -0.63
COL6A3-203ENST00000353578 LINC01553A4QN01 128 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 RAC3P60763 192 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 C17orf47Q8NEP4 570 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF48Q96MX3 618 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-203ENST00000353578 IL36GQ9NZH8 169 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 MAS1LP35410 378 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM50BP56557 158 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 HSD52Q0P140 79 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF816Q0VGE8 651 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-203ENST00000353578 SPSB4Q96A44 273 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 DMRTA2Q96SC8 542 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 B3GALT4O96024 378 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 TNFRSF1AP19438 455 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 OR10J3Q5JRS4 329 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 YRDCQ86U90 279 aaKnown RBP11.11□□□□□ -0.63
COL6A3-203ENST00000353578 WDR31Q8NA23 367 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 MPC1Q9Y5U8 109 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 HCRTO43612 131 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 ICOSLGO75144 302 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 RASL11AQ6T310 242 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 PAQR9Q6ZVX9 377 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 UPK1AO00322 258 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 TNFSF13O75888 250 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 CSN3P07498 182 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 KIR3DL2P43630 455 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 FNDC7Q5VTL7 733 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 OR10D3Q8NH80 312 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM170AQ8WVE7 144 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 OVOL2Q9BRP0 275 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 GREB1Q4ZG55 1949 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 SRIP30626 198 aa11.11□□□□□ -0.63
COL6A3-203ENST00000353578 CKS2P33552 79 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 ALKAL1Q6UXT8 129 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 C17orf51A8MQB3 221 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 H3BNC9 293 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 MKRN2OSH3BPM6 223 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 SPRYD7Q5W111 196 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 TSACCQ96A04 125 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-203ENST00000353578 PHF3Q92576 2039 aaKnown RBP11.1□□□□□ -0.63
COL6A3-203ENST00000353578 TRBV23-1A0A0A0MS06 115 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 A0A1W2PQM1 296 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM52BQ4KMG9 183 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 BHLHA15Q7RTS1 189 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-203ENST00000353578 MSRB3Q8IXL7 192 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 NUP37Q8NFH4 326 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 SPINK4O60575 86 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 DCAF10Q5QP82 559 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF740Q8NDX6 193 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 TM4SF1P30408 202 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM30BQ3MIR4 351 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 WDYHV1Q96HA8 205 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 STRCQ7RTU9 1775 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 GPR183P32249 361 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF362Q5T0B9 420 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-203ENST00000353578 Q6ZSR6 202 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 CACNG4Q9UBN1 327 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 ARFGEF3Q5TH69 2177 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 SP6Q3SY56 376 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 CREBBPQ92793 2442 aa11.1□□□□□ -0.63
COL6A3-203ENST00000353578 EML2O95834 649 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 LRRC10Q5BKY1 277 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 C1orf194Q5T5A4 169 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 CITED2Q99967 270 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 EP300Q09472 2414 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF785A8K8V0 405 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 CNEP1R1Q8N9A8 125 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 APCDD1LQ8NCL9 501 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 SDHCQ99643 169 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 NPVFQ9HCQ7 196 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 SMPXQ9UHP9 88 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 TMEM8BA6NDV4 472 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 SBK3P0C264 359 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 ERRFI1Q9UJM3 462 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BKO60814 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BJP06899 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BOP23527 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BBP33778 126 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms