RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF596Q8TC21 504 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 WDYHV1Q96HA8 205 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 SLC45A2Q9UMX9 530 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 SYNGR3O43761 229 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 P2RY1P47900 373 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 PJVKQ0ZLH3 352 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF260Q3ZCT1 412 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 LAIR2Q6ISS4 152 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 CCDC144NLQ6NUI1 221 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 SPACA3Q8IXA5 215 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 MUC15Q8N387 334 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 OR10G4Q8NGN3 311 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 OR10G9Q8NGN4 311 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 OR10G7Q8NGN6 311 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 TMEM50BP56557 158 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 LINC00114Q6XXX2 140 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 MS4A7Q9GZW8 240 aaPredicted RBP12.82□□□□□ -0.36
COL17A1-201ENST00000353479 DLL3Q9NYJ7 618 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF320A2RRD8 509 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 DHRS7CA6NNS2 312 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 SLC25A5P05141 298 aaKnown RBP12.82□□□□□ -0.36
COL17A1-201ENST00000353479 CDC34P49427 236 aaPredicted RBP12.82□□□□□ -0.36
COL17A1-201ENST00000353479 RHOBP62745 196 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 BATFQ16520 125 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 PLAC9Q5JTB6 97 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 PHYHD1Q5SRE7 291 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 CD200R1LQ6Q8B3 271 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 ZNRF4Q8WWF5 429 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 RTN4RQ9BZR6 473 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 PPP1R3EQ9H7J1 279 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 SDK2Q58EX2 2172 aa12.82□□□□□ -0.36
COL17A1-201ENST00000353479 GNG7O60262 68 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 GUK1Q16774 197 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 ECSCRQ19T08 205 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 GRAMD2BQ96HH9 432 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 SH2D2AQ9NP31 389 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 SF3B6Q9Y3B4 125 aaKnown RBP12.81□□□□□ -0.36
COL17A1-201ENST00000353479 IGHV3-72A0A0B4J1Y9 119 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 LRRC3CA6NJW4 275 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 ATP5J2P56134 94 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 NXF2Q9GZY0 626 aaKnown RBP12.81□□□□□ -0.36
COL17A1-201ENST00000353479 RIF1Q5UIP0 2472 aaKnown RBP12.81□□□□□ -0.36
COL17A1-201ENST00000353479 DOCK4Q8N1I0 1966 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 SEMA7AO75326 666 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 CECR9P0C854 216 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 SLC25A53Q5H9E4 307 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 GCSAMQ8N6F7 178 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 C9orf106Q8NAJ2 232 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 NPBWR2P48146 333 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 FGF8P55075 233 aaPredicted RBP12.81□□□□□ -0.36
COL17A1-201ENST00000353479 OR1L4Q8NGR5 311 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 OR1L1Q8NH94 360 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF837Q96EG3 531 aaPredicted RBP12.81□□□□□ -0.36
COL17A1-201ENST00000353479 POMT1Q9Y6A1 747 aa12.81□□□□□ -0.36
COL17A1-201ENST00000353479 RNASEK-C17orf49H0YIS7 233 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 DNASE2O00115 360 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-201ENST00000353479 LHX2P50458 406 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 CLDN18P56856 261 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 BVESQ8NE79 360 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 SLC25A38Q96DW6 304 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ALPK2Q86TB3 2170 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 A1L4Q6 167 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 FDX2Q6P4F2 183 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF788Q6ZQV5 615 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 BCL2L2Q92843 193 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ATP5SQ99766 215 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 CHODLQ9H9P2 273 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 IL19Q9UHD0 177 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 HMSDA8MTL9 139 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 KLK2P20151 261 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 OR11H7Q8NGC8 314 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 TCEAL7Q9BRU2 100 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 CABLES2Q9BTV7 478 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 FOXD3Q9UJU5 478 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-201ENST00000353479 MRPS18CQ9Y3D5 142 aaKnown RBP12.8□□□□□ -0.36
COL17A1-201ENST00000353479 IGHV1-69-2A0A0G2JMI3 117 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 IFNL4K9M1U5 179 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 GFRA1P56159 465 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ERVFC1-1P60608 527 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ERVS71-1P61550 626 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 KIAA0141Q14154 515 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-201ENST00000353479 UNQ9370/PRO34162Q6UXP9 181 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 LRRC75AQ8NAA5 344 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 PIMREGQ9BSJ6 248 aa12.8□□□□□ -0.36
COL17A1-201ENST00000353479 ODAMA1E959 279 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A10PA6NDY2 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A18PA6NE21 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A16PA6NEW6 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A20PA6NIJ5 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A8PA6NJQ4 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A7PA6NKC0 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A22PA8MWA6 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A12PA8MX19 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A5PA8MXJ8 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A23PA8MXZ1 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A15PP0C7V4 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A13PP0C7W8 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A14PP0C7W9 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 FAM90A24PP0C7X0 464 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 PAX6P26367 422 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms