RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 BAMBIQ13145 260 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 PPP1R1AQ13522 171 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 Q3ZCU0 254 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 C4orf46Q504U0 113 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 NLRC3Q7RTR2 1065 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 AKAP14Q86UN6 197 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 ADAD2Q8NCV1 583 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 IL1F10Q8WWZ1 152 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 GALNT14Q96FL9 552 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 PSMG3-AS1Q96PY0 264 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 BEX2Q9BXY8 128 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 MED28Q9H204 178 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 BEX1Q9HBH7 125 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 SLC2A9Q9NRM0 540 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 C19orf12Q9NSK7 152 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 TENM4Q6N022 2769 aa12.33□□□□□ -0.44
CCDC88C-202ENST00000334448 LRBAP50851 2863 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 GPR31O00270 319 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 HSPA12AO43301 675 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 YPEL1O60688 119 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 NDUFS7O75251 213 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 SFT2D2O95562 160 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 HLA-AP01891 365 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 SSTR2P30874 369 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 GPR6P46095 362 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 LUMP51884 338 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 CBX3Q13185 183 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 C11orf88Q6PI97 169 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 FGFRL1Q8N441 504 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 CCDC71LQ8N9Z2 235 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 BVESQ8NE79 360 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 OR8B3Q8NGG8 313 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 OR10V1Q8NGI7 309 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 TOMM40LQ969M1 308 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 AKR1E2Q96JD6 320 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 DMRTB1Q96MA1 342 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 YPEL2Q96QA6 119 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 OR8B2Q96RD0 313 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 GAL3ST2Q9H3Q3 398 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 PATZ1Q9HBE1 687 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 GFOD1Q9NXC2 390 aa12.32□□□□□ -0.44
CCDC88C-202ENST00000334448 NDUFS8O00217 210 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 SLC22A5O76082 557 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 RGS11O94810 467 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 RBP4P02753 201 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 HLA-GP17693 338 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 PI3P19957 117 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 CEACAM6P40199 344 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 DLX6P56179 175 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 FXYD4P59646 89 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 FCN2Q15485 313 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 CARTPTQ16568 116 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 AVPI1Q5T686 147 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 WDR25Q64LD2 544 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 TMEM200BQ69YZ2 307 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 HEPN1Q6WQI6 88 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 KCTD9Q7L273 389 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 PRR18Q8N4B5 295 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 ZBTB34Q8NCN2 500 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 OR52B4Q8NGK2 314 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 EDARADDQ8WWZ3 215 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 ASB13Q8WXK3 278 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 NINJ1Q92982 152 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 GSX2Q9BZM3 304 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 SLC5A7Q9GZV3 580 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 OR2S2Q9NQN1 319 aa12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 RPUSD1Q9UJJ7 312 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-202ENST00000334448 DBX1A6NMT0 343 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 SSNA1O43805 119 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 B3GALNT1O75752 331 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 AKR1C4P17516 323 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 PIGPP57054 158 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 ZNF273Q14593 569 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 GNMTQ14749 295 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 ABCA11PQ4W5N1 156 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 SGPP2Q8IWX5 399 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 CMTM1Q8IZ96 169 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 C12orf45Q8N5I9 185 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 C8orf31Q8N9H6 132 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 LY6G5BQ8NDX9 201 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 OR2AK2Q8NG84 335 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 OR11H7Q8NGC8 314 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 OR52L2PQ8NGH6 319 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 UBALD1Q8TB05 177 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 RTN4IP1Q8WWV3 396 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 ST6GAL2Q96JF0 529 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 ZNF714Q96N38 554 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 AGMATQ9BSE5 352 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 PARP12Q9H0J9 701 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 NAA60Q9H7X0 242 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 IDI2-AS1Q9NZ38 188 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 USF3Q68DE3 2245 aa12.3□□□□□ -0.44
CCDC88C-202ENST00000334448 CCNKO75909 580 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 IGLV2-14P01704 120 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 PPP1CCP36873 323 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 PDLIM4P50479 330 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 MORN2Q502X0 79 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 ZNF818PQ6ZRF7 136 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 TCTE3Q8IZS6 198 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 LRTM2Q8N967 370 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms