RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 OR5H2Q8NGV7 314 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 PLPPR1Q8TBJ4 325 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 SLC6A7Q99884 636 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 TRAPPC2LQ9UL33 140 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 TRAV39A0A0B4J263 110 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 PPIHO43447 177 aaKnown RBP8.38□□□□□ -1.07
HMGB3-201ENST00000325307 NDUFS7O75251 213 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 DTYMKP23919 212 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 AESQ08117 197 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 STUMQ69YW2 141 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 C11orf88Q6PI97 169 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 HOGA1Q86XE5 327 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF665Q9H7R5 613 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF286AQ9HBT8 521 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 HELZ2Q9BYK8 2649 aaKnown RBP8.38□□□□□ -1.07
HMGB3-201ENST00000325307 AMY2AP04746 511 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 NDUFB7P17568 137 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 G0S2P27469 103 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 EDDM3BP56851 147 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 H2BFSP57053 126 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 SCGB2B2Q4G0G5 96 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 AVPI1Q5T686 147 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 TEX36Q5VZQ5 186 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 MUC20Q8N307 709 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-201ENST00000325307 SPICQ8N5J4 248 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 FAM216BQ8N7L0 139 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 CXorf58Q96LI9 332 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 MYOZ1Q9NP98 299 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-201ENST00000325307 ANAPC10Q9UM13 185 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 SPG11Q96JI7 2443 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 MEX3AA1L020 520 aaKnown RBP8.37□□□□□ -1.07
HMGB3-201ENST00000325307 SNRPGP15A8MWD9 76 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 LMO1P25800 156 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 OR3A1P47881 315 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 TAS2R46P59540 309 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 ATRAIDQ6UW56 229 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 C17orf107Q6ZR85 190 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 TPRX1Q8N7U7 411 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 TIMD4Q96H15 378 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 A0A1B0GW55 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 TMEM30CPA0ZSE6 113 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 H7C1Q1 480 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 ADAM20O43506 726 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L2P0CJ85 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L3P0CJ86 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L4P0CJ87 422 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L5P0CJ88 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L6P0CJ89 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L7P0CJ90 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DNASE1P24855 282 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 IL13RA1P78552 427 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DCAF12L2Q5VW00 463 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4L9Q6RFH8 374 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF561Q8N587 486 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 SNX22Q96L94 193 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 EHFQ9NZC4 300 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 DUX4Q9UBX2 424 aa8.37□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF107Q9UII5 783 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-201ENST00000325307 IGKV1D-8A0A087WSZ0 117 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SDCBPO00560 298 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 CREBL2O60519 120 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OR2A4O95047 310 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 RCC1P18754 421 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 EFNA4P52798 201 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 MEF2DQ14814 521 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OPCMLQ14982 345 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SSX2Q16385 188 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 MRPL30Q8TCC3 161 aaKnown RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 GAFA1Q96PS6 74 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OR2A7Q96R45 310 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 MGAT4CQ9UBM8 478 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ANXA10Q9UJ72 324 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 TENM4Q6N022 2769 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 DISC1C4P0D8 188 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF737O75373 536 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 NAPSAO96009 420 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SSTR2P30874 369 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SEC61A1P61619 476 aaKnown RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 FGL1Q08830 312 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ACTBL2Q562R1 376 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ATPAF1Q5TC12 328 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF497Q6ZNH5 498 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF295-AS1Q8N0V1 137 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OR1S1Q8NH92 325 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 PCNPQ8WW12 178 aaKnown RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 NRGNQ92686 78 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 RAB1CQ92928 201 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SLC2A8Q9NY64 477 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 VSIG4Q9Y279 399 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 MARCH11A6NNE9 402 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 MGST3O14880 152 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 F12P00748 615 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-201ENST00000325307 TK1P04183 234 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 CXCL2P19875 107 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 TBPP20226 339 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 GLIPR1P48060 266 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 KCNJ3P48549 501 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OR5AP2Q8NGF4 316 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 OR2T35Q8NGX2 323 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 DTD1Q8TEA8 209 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms