RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PTCRAQ6ISU1 281 aaPredicted RBP16.76■□□□□ 0.27
USP48-201ENST00000308271 SRD5A3Q9H8P0 318 aa16.76■□□□□ 0.27
USP48-201ENST00000308271 DBX1A6NMT0 343 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 SNURFLB1AK76 121 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 TMEM183AQ8IXX5 376 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 SP7Q8TDD2 431 aaPredicted RBP16.75■□□□□ 0.27
USP48-201ENST00000308271 GPR35Q9HC97 309 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 CRYAAP02489 173 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 ADH4P08319 380 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 GAB4Q2WGN9 574 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 C9orf50Q5SZB4 431 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 ABLIM2Q6H8Q1 611 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 TXNDC17Q9BRA2 123 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 A0A1W2PR80 420 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 IGHV4-34P06331 123 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 R3HDM4Q96D70 268 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 GMPPAQ96IJ6 420 aaPredicted RBP16.75■□□□□ 0.27
USP48-201ENST00000308271 FAM117AQ9C073 453 aa16.75■□□□□ 0.27
USP48-201ENST00000308271 TAF15Q92804 592 aaKnown RBP eCLIP16.75■□□□□ 0.27
USP48-201ENST00000308271 COLCA2A8K830 154 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 DEFB108AA8MXU0 73 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 CTSBP07858 339 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 FGF12P61328 243 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 PLPPR2Q96GM1 343 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 TWSG1Q9GZX9 223 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 LOC101059948A0A1B0GTJ6 334 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 SRP19P09132 144 aaKnown RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 KIR2DS2P43631 304 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 IER3P46695 156 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 DEFB123Q8N688 67 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 MRGPRDQ8TDS7 321 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 CXorf1O96002 111 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 TDHQ8IZJ6 230 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 FGF11Q92914 225 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 ZNF835Q9Y2P0 537 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 ATP23Q9Y6H3 246 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 C5orf52A6NGY3 159 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 ZNF891A8MT65 544 aaPredicted RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 IGKV3-11P04433 115 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 SCTP09683 121 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 WDR25Q64LD2 544 aaPredicted RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 SLC22A18ASQ8N1D0 253 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 DEFB108BQ8NET1 73 aa16.74■□□□□ 0.27
USP48-201ENST00000308271 AURKAIP1Q9NWT8 199 aaPredicted RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 TECRQ9NZ01 308 aaKnown RBP16.74■□□□□ 0.27
USP48-201ENST00000308271 LIFP15018 202 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 CXorf67Q86X51 503 aaPredicted RBP16.73■□□□□ 0.27
USP48-201ENST00000308271 SCCPDHQ8NBX0 429 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 WDR61Q9GZS3 305 aaKnown RBP16.73■□□□□ 0.27
USP48-201ENST00000308271 TRGV10A0A0A0MS01 117 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 LOC390937A0A1W2PQ73 354 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 TRA2AQ13595 282 aaKnown RBP eCLIP16.73■□□□□ 0.278e-6■□□□□ 8.1
USP48-201ENST00000308271 C21orf62-AS1Q17RA5 79 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 C19orf35Q6ZS72 473 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 TM2D1Q9BX74 207 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 RLFQ13129 1914 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 OOEPA6NGQ2 149 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 RAB7AP51149 207 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 VASH2Q86V25 355 aa16.73■□□□□ 0.27
USP48-201ENST00000308271 DIRC3C9JPN6 131 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 CD5P06127 495 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 TAS2R60P59551 318 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 GPR146Q96CH1 333 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 CRISPLD2Q9H0B8 497 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 COA4Q9NYJ1 87 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 TRBV6-7A0A0A0MS04 114 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 CCL3P10147 92 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 DEFA4P12838 97 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 BRS3P32247 399 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 CSN1S1P47710 185 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 PGLYRP1O75594 196 aaPredicted RBP16.72■□□□□ 0.27
USP48-201ENST00000308271 G6PCP35575 357 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 SPCS3P61009 180 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 ACSM6Q6P461 480 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 OR4C12Q96R67 309 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 USF1P22415 310 aaPredicted RBP16.72■□□□□ 0.27
USP48-201ENST00000308271 TFF2Q03403 129 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 GTF2H5Q6ZYL4 71 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 HSPB9Q9BQS6 159 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 ELOVL1Q9BW60 279 aa16.72■□□□□ 0.27
USP48-201ENST00000308271 IGHV3-43A0A0B4J1X8 118 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 M0R2Z0 102 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 KBTBD11O94819 623 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 IGHV3-43DP0DP04 118 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 FA2HQ7L5A8 372 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 PSMG3Q9BT73 122 aaPredicted RBP16.71■□□□□ 0.27
USP48-201ENST00000308271 RNF122Q9H9V4 155 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 ST8SIA5O15466 376 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 TCL1AP56279 114 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 BTNL3Q6UXE8 466 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 OR10X1Q8NGY0 326 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 TMEM204Q9BSN7 226 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 LOXL2Q9Y4K0 774 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 TMEM250H0YL14 139 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 PSG4Q00888 419 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 OR4P4Q8NGL7 312 aa16.71■□□□□ 0.27
USP48-201ENST00000308271 HSD17B10Q99714 261 aaKnown RBP16.71■□□□□ 0.27
USP48-201ENST00000308271 IGSF23A1L1A6 192 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 HELTA6NFD8 242 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms