RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 COL5A1-AS1Q5SY13 56 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 SNURFLB1AK76 121 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 NGFP01138 241 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 GCGP01275 180 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 GNG4P50150 75 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 HLA-DRB5Q30154 266 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 CORO2AQ92828 525 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 SLC35E1Q96K37 410 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 TMEM204Q9BSN7 226 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 WDR54Q9H977 334 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 NAGKQ9UJ70 344 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 LOC101059948A0A1B0GTJ6 334 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 SHISA7A6NL88 538 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 COLCA2A8K830 154 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 KLRC4-KLRK1H3BQV0 150 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 GDF9O60383 454 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 ISG15P05161 165 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 USF1P22415 310 aaPredicted RBP13.33□□□□□ -0.28
SHH-201ENST00000297261 CA6P23280 308 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 SSPNQ14714 243 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 MRPL54Q6P161 138 aaKnown RBP13.33□□□□□ -0.28
SHH-201ENST00000297261 APOBEC3DQ96AK3 386 aaPredicted RBP13.33□□□□□ -0.28
SHH-201ENST00000297261 S1PR3Q99500 378 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 COA4Q9NYJ1 87 aa13.33□□□□□ -0.28
SHH-201ENST00000297261 THADAQ6YHU6 1953 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 IGKV3D-11A0A0A0MRZ8 115 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 CRYM-AS1A6NIL9 109 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 IGHV3-13P01766 116 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 IGHV3-7P01780 117 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 MEF2BQ02080 365 aaPredicted RBP13.32□□□□□ -0.28
SHH-201ENST00000297261 EGR4Q05215 589 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 DEFB124Q8NES8 71 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 AKIRIN1Q9H9L7 192 aaPredicted RBP13.32□□□□□ -0.28
SHH-201ENST00000297261 PLA2G3Q9NZ20 509 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 TUBD1Q9UJT1 453 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 FGF5P12034 268 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 GLIPR1P48060 266 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 LSM6P62312 80 aaKnown RBP13.32□□□□□ -0.28
SHH-201ENST00000297261 EIF3IQ13347 325 aaKnown RBP13.32□□□□□ -0.28
SHH-201ENST00000297261 COL19A1Q14993 1142 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 C17orf82Q86X59 251 aaPredicted RBP13.32□□□□□ -0.28
SHH-201ENST00000297261 TMEM14DPA8MWL7 114 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 PSG2P11465 335 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 MZT1Q08AG7 82 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 G6PC2Q9NQR9 355 aa13.32□□□□□ -0.28
SHH-201ENST00000297261 M0R1X1 148 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 FCGR3BO75015 233 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 SP9P0CG40 484 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 CCL3P10147 92 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 IZUMO4Q1ZYL8 232 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 UCN2Q96RP3 112 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 LRFN3Q9BTN0 628 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 OR2D2Q9H210 308 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 MANBALQ9NQG1 85 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 HOXA6P31267 233 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 TAS2R60P59551 318 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 SLC35B1P78383 322 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 SLC23A3Q6PIS1 610 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 OR5D13Q8NGL4 314 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 TRIB1Q96RU8 372 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 SRD5A3Q9H8P0 318 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 IGHV3-43A0A0B4J1X8 118 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 DIRC3C9JPN6 131 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 IGHV3-43DP0DP04 118 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 TRIP6Q15654 476 aaKnown RBP13.31□□□□□ -0.28
SHH-201ENST00000297261 FDX2Q6P4F2 183 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 SSMEM1Q8WWF3 244 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 ACY3Q96HD9 319 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 PSG11Q9UQ72 335 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 C5orf52A6NGY3 159 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 UBE2CO00762 179 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 FGF16O43320 207 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 RAB24Q969Q5 203 aa13.31□□□□□ -0.28
SHH-201ENST00000297261 CTXND1A0A1B0GTU2 59 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 MST1P26927 711 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 OR3A1P47881 315 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 TEX30Q5JUR7 227 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 STUMQ69YW2 141 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 TMEM211Q6ICI0 200 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 CT45A6P0DMU7 189 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 CT45A5P0DMU8 189 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 CT45A7P0DMV0 189 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 ZNF124Q15973 351 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 CT45A1Q5HYN5 189 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 TMEM178AQ8NBL3 297 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 OR2V1Q8NHB1 315 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 CT45A3Q8NHU0 189 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 TAAR6Q96RI8 345 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 ZNF391Q9UJN7 358 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 ST8SIA5O15466 376 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 RPEL1Q2QD12 228 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 EDARADDQ8WWZ3 215 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 DEFB127Q9H1M4 99 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 TAAR3PQ9P1P4 343 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 PTPRSQ13332 1948 aa13.3□□□□□ -0.28
SHH-201ENST00000297261 HIST1H1BP16401 226 aaKnown RBP13.29□□□□□ -0.28
SHH-201ENST00000297261 TMEM11P17152 192 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 ARR3P36575 388 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 Q8WTZ3 238 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 ZNF835Q9Y2P0 537 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms