RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SAT2Q96F10 170 aaPredicted RBP11.68□□□□□ -0.54
LDLR-201ENST00000252444 ATP5SQ99766 215 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 TMEM167BQ9NRX6 74 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 CLDN16Q9Y5I7 305 aa11.68□□□□□ -0.54
LDLR-201ENST00000252444 TRAV30A0A087WSZ9 112 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 PPOXP50336 477 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 ATP5J2P56134 94 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 OR5R1Q8NH85 324 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 U3KQ87 197 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 USF1P22415 310 aaPredicted RBP11.67□□□□□ -0.54
LDLR-201ENST00000252444 SPCS3P61009 180 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 HRH4Q9H3N8 390 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 AAMDCQ9H7C9 122 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 RAB27BO00194 218 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 MPC2O95563 127 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 PGA5P0DJD9 388 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 SLC25A6P12236 298 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 AGAP20933 346 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 UBE2V2Q15819 145 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 OR52M1Q8NGK5 317 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 MUC22E2RYF6 1773 aaPredicted RBP11.67□□□□□ -0.54
LDLR-201ENST00000252444 PPIAL4CA0A0B4J2A2 164 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 PIN1P1O15428 100 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 KRASP01116 189 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 GYPAP02724 150 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 PPIAL4GP0DN37 164 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 ARL16Q0P5N6 197 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 LAIR2Q6ISS4 152 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 OR52L2PQ8NGH6 319 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 JMJD8Q96S16 334 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 MS4A7Q9GZW8 240 aaPredicted RBP11.67□□□□□ -0.54
LDLR-201ENST00000252444 NPDC1Q9NQX5 325 aaPredicted RBP11.67□□□□□ -0.54
LDLR-201ENST00000252444 C1orf196B1AJZ1 125 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 HTR1DP28221 377 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 ETV3LQ6ZN32 361 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 KCNRGQ8N5I3 272 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 HARBI1Q96MB7 349 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 MANBALQ9NQG1 85 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 TIMM9Q9Y5J7 89 aa11.67□□□□□ -0.54
LDLR-201ENST00000252444 DENND4AQ7Z401 1863 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 A0A1B0GTI1 187 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 SIX6O95475 246 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 RAB9AP51151 201 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 UBE2KP61086 200 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 NABP1Q96AH0 204 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 IAPPP10997 89 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ATF4P18848 351 aaPredicted RBP11.66□□□□□ -0.54
LDLR-201ENST00000252444 SULT1A1P50225 295 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 CCL8P80075 99 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ST3GAL2Q16842 350 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 SNRNP40Q96DI7 357 aaKnown RBP11.66□□□□□ -0.54
LDLR-201ENST00000252444 STARD4Q96DR4 205 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 MS4A3Q96HJ5 214 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 CCL13Q99616 98 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 TXNDC17Q9BRA2 123 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ARG1P05089 322 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 OR2B11Q5JQS5 317 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ST8SIA2Q92186 375 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 TMEM222Q9H0R3 208 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 GPR132Q9UNW8 380 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ZNF14P17017 642 aaPredicted RBP11.66□□□□□ -0.54
LDLR-201ENST00000252444 AESQ08117 197 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 Q56UQ5 140 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 ZNF787Q6DD87 383 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 FAAP20Q6NZ36 180 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 DTD1Q8TEA8 209 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 GINS3Q9BRX5 216 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 SLC25A15Q9Y619 301 aa11.66□□□□□ -0.54
LDLR-201ENST00000252444 OOSP1A8MZH6 123 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 RAMP1O60894 148 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 ADRB1P08588 477 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 MST1P26927 711 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 MAS1LP35410 378 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 SELENOTP62341 195 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 SSX2Q16385 188 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 SLC25A38Q96DW6 304 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 CRYZL1O95825 349 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 PLXNB3Q9ULL4 1909 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 IGHV3-64DA0A0J9YX35 117 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 RFESDQ8TAC1 157 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 CHAC2Q8WUX2 184 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 TMEM204Q9BSN7 226 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 OR51I2Q9H344 312 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 SMDT1Q9H4I9 107 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 TRIOBPQ9H2D6 2365 aa11.65□□□□□ -0.54
LDLR-201ENST00000252444 CRYM-AS1A6NIL9 109 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 FAM90A9PA6NNJ1 464 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 M0QZK8 103 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 NDUFS8O00217 210 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 CFPP27918 469 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 TMEM182Q6ZP80 229 aaPredicted RBP11.65□□□□□ -0.55
LDLR-201ENST00000252444 PDPNQ86YL7 162 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 NCOR1P1Q9H4R4 102 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 CCL28Q9NRJ3 127 aa11.65□□□□□ -0.55
LDLR-201ENST00000252444 ACAA1P09110 424 aaPredicted RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 KIR2DL2P43627 348 aaPredicted RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 CNN1P51911 297 aaKnown RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 NKX6-1P78426 367 aaPredicted RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 EXOSC2Q13868 293 aaKnown RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 TNXAQ16473 311 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms