RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 MED6O75586 246 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 EIF3GO75821 320 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 CRYAAP02489 173 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L2P0CJ85 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L3P0CJ86 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L4P0CJ87 422 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L5P0CJ88 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L6P0CJ89 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4L7P0CJ90 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 IGKV1-13P0DP09 117 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 UBA52P62987 128 aaKnown RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 VAMP2P63027 116 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 TAGLNQ01995 201 aaKnown RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 NHLH2Q02577 135 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 AESQ08117 197 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 PSG7Q13046 419 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF672Q499Z4 452 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 FAM201AQ5SY85 155 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 TBC1D26Q86UD7 250 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 BAP18Q8IXM2 172 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 OR10V1Q8NGI7 309 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 C18orf12Q96KH6 178 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 OR1A1Q9P1Q5 309 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DUX4Q9UBX2 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 FBLN5Q9UBX5 448 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF107Q9UII5 783 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 SLC25A15Q9Y619 301 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 RFNGQ9Y644 331 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 ARFGEF3Q5TH69 2177 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 LINC00862A6NCI5 91 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 SSSCA1O60232 199 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 CD37P11049 281 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 MUC15Q8N387 334 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 SLC35G3Q8N808 338 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 SCCPDHQ8NBX0 429 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 OR5A2Q8NGI9 324 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 BSCL2Q96G97 398 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 RTL8AQ9BWD3 113 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 LINC00470Q9BZP3 86 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 NAA60Q9H7X0 242 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 TAF9BQ9HBM6 251 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 RAB18Q9NP72 206 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DNAJB11Q9UBS4 358 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 AMDHD2Q9Y303 409 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 IGHV3OR15-7A0A075B7D8 119 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 FAM24AA6NFZ4 105 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 LOXP28300 417 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 EDDM3BP56851 147 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF154Q13106 437 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 GNMTQ14749 295 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 CMTM1Q8IZ96 169 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 KLF14Q8TD94 323 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 TRAF4Q9BUZ4 470 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-201ENST00000238497 TMUB1Q9BVT8 246 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 DNTTIP1Q9H147 329 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF391Q9UJN7 358 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 C3orf85A0A1B0GTC6 90 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 PQLC2LA1A4F0 135 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 ADAM20O43506 726 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 PET100P0DJ07 73 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 IL2RGP31785 369 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 TMEM33P57088 247 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 FGF12P61328 243 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 TMEM88Q6PEY1 159 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF818PQ6ZRF7 136 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CIARTQ8N365 385 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 WDR31Q8NA23 367 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 DCTN5Q9BTE1 182 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 TMEM100Q9NV29 134 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 WNK2Q9Y3S1 2297 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 E7EQL1 145 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 RPL36A-HNRNPH2H7BZ11 118 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CTSDP07339 412 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CLEC12BQ2HXU8 276 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 SPINK9Q5DT21 86 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CXorf66Q5JRM2 361 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 FAM209AQ5JX71 171 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 TMEM42Q69YG0 159 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 RGS7BPQ6MZT1 257 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 FAHD2BQ6P2I3 314 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 LHFPL1Q86WI0 220 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 LGI3Q8N145 548 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 ZCCHC24Q8N2G6 241 aaKnown RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CCDC71LQ8N9Z2 235 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 MRGPRDQ8TDS7 321 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 GLYATL2Q8WU03 294 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 OR5P3Q8WZ94 311 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 FAHD2AQ96GK7 314 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 TSNAXQ99598 290 aaKnown RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 SUCNR1Q9BXA5 334 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 CXXC4Q9H2H0 198 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 FBXL17Q9UF56 701 aa7.28□□□□□ -1.24
VPS4B-201ENST00000238497 RCL1Q9Y2P8 373 aaKnown RBP7.28□□□□□ -1.24
VPS4B-201ENST00000238497 PCP4L1A6NKN8 68 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 RNF223E7ERA6 249 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 MPPED1O15442 326 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 OR2H2O95918 312 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 CD8AP01732 235 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 IAPPP10997 89 aa7.27□□□□□ -1.24
VPS4B-201ENST00000238497 CEACAM6P40199 344 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms