RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 RCL1Q9Y2P8 373 aaKnown RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 RBM7Q9Y580 266 aaKnown RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 DOCK11Q5JSL3 2073 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 A6NJY4 79 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 TIMM8AO60220 97 aaPredicted RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 MED6O75586 246 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 F12P00748 615 aaPredicted RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 IGKV3-15P01624 115 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 PMELP40967 661 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 LPAR6P43657 344 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 FHITP49789 147 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 FAM76BQ5HYJ3 339 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 GTF3AQ92664 365 aaKnown RBP8.99□□□□□ -0.97
CUX1-221ENST00000622516 PKIBQ9C010 78 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 SPACA1Q9HBV2 294 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 TMEM100Q9NV29 134 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 DUSP13Q9UII6 198 aa8.99□□□□□ -0.97
CUX1-221ENST00000622516 A0A1B0GV50 99 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 LRP5LA4QPB2 252 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 FAM24AA6NFZ4 105 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 FGF16O43320 207 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 PGLYRP1O75594 196 aaPredicted RBP8.98□□□□□ -0.97
CUX1-221ENST00000622516 TUSC2O75896 110 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 C1QL1O75973 258 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 CBR1P16152 277 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 RPL35P42766 123 aaKnown RBP8.98□□□□□ -0.97
CUX1-221ENST00000622516 CAV2P51636 162 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 NAAAQ02083 359 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 VHLLQ6RSH7 139 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 Q6ZR03 302 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 SELENOHQ8IZQ5 122 aaKnown RBP8.98□□□□□ -0.97
CUX1-221ENST00000622516 LRTM2Q8N967 370 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 DMBX1Q8NFW5 382 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 RNF150Q9ULK6 438 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 CBY1Q9Y3M2 126 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 ABCD4O14678 606 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 ST8SIA3O43173 380 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 SSSCA1O60232 199 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 OR8U9P0C7N5 309 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 PGA5P0DJD9 388 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 ZNF83P51522 516 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 HLA-DRB3P79483 266 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 AESQ08117 197 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 CLINT1Q14677 625 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 MST1LQ2TV78 715 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 ZNF324BQ6AW86 544 aaPredicted RBP8.98□□□□□ -0.97
CUX1-221ENST00000622516 LRP11Q86VZ4 500 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 HSD17B11Q8NBQ5 300 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 OR4A4PQ8NGN8 299 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 OR8U1Q8NH10 309 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 LRRC46Q96FV0 321 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 NRIP2Q9BQI9 281 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 SH3BGRL3Q9H299 93 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 PROCRQ9UNN8 238 aa8.98□□□□□ -0.97
CUX1-221ENST00000622516 IGHV1-18A0A0C4DH31 117 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 A0A1B0GW55 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 IQCF6A8MYZ5 107 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 E5RGE8 158 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L2P0CJ85 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L3P0CJ86 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L4P0CJ87 422 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L5P0CJ88 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L6P0CJ89 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4L7P0CJ90 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 CEACAM1P13688 526 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 COX5AP20674 150 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 ERVK11-1P61568 191 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 Q6ZS49 121 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 CMTM1Q8IZ96 169 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 EIF4E3Q8N5X7 224 aaKnown RBP8.97□□□□□ -0.97
CUX1-221ENST00000622516 ZNF71Q9NQZ8 489 aaPredicted RBP8.97□□□□□ -0.97
CUX1-221ENST00000622516 DUX4Q9UBX2 424 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 LPAR3Q9UBY5 353 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 METRNQ9UJH8 293 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 PURGQ9UJV8 347 aaKnown RBP8.97□□□□□ -0.97
CUX1-221ENST00000622516 KCNS2Q9ULS6 477 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 NSG2Q9Y328 171 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 OR2W1Q9Y3N9 320 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 A0A0G2JRQ6 117 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 PSG2P11465 335 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 FLI1Q01543 452 aaPredicted RBP8.97□□□□□ -0.97
CUX1-221ENST00000622516 IL13RA2Q14627 380 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 MSMPQ1L6U9 139 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 C11orf53Q8IXP5 236 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 TMEM217Q8N7C4 229 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 PLPPR2Q96GM1 343 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 PLSCR4Q9NRQ2 329 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 GLS2Q9UI32 602 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 POLDIP2Q9Y2S7 368 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 TMED3Q9Y3Q3 217 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 ATRXP46100 2492 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 H3BP45 60 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 CDS2O95674 445 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 HAND1O96004 215 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 ADCYAP1P18509 176 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 CEACAM6P40199 344 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 HOXA1P49639 335 aaPredicted RBP8.97□□□□□ -0.97
CUX1-221ENST00000622516 AARDQ4LEZ3 155 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 OR8G5Q8NG78 346 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 OR4D5Q8NGN0 318 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms