RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ALX4Q9H161 411 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-213ENST00000620219 RNF115Q9Y4L5 304 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 DPRXA6NFQ7 191 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 TAGLNQ01995 201 aaKnown RBP13.3□□□□□ -0.28
CPSF1-213ENST00000620219 C11orf87Q6NUJ2 197 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 PLPPR1Q8TBJ4 325 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 USB1Q9BQ65 265 aaKnown RBP13.3□□□□□ -0.28
CPSF1-213ENST00000620219 LAMP3Q9UQV4 416 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 IFNA17P01571 189 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 C2orf50Q96LR7 162 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 NUDT16L1Q9BRJ7 211 aaKnown RBP13.29□□□□□ -0.28
CPSF1-213ENST00000620219 IL36GQ9NZH8 169 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 NDUFB3O43676 98 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 PGA5P0DJD9 388 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 SELLP14151 372 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 SEZ6L2Q6UXD5 910 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 ACP7Q6ZNF0 438 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 MED19A0JLT2 244 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-213ENST00000620219 LYNX1G3V0Z9 82 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 ST8SIA5O15466 376 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 LYNX1P0DP58 116 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 NKX2-1P43699 371 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-213ENST00000620219 AVPI1Q5T686 147 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 MOB1BQ7L9L4 216 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 ABHD14BQ96IU4 210 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 M0R1X1 148 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 RGS13O14921 159 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 MPPED1O15442 326 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 HBZP02008 142 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 CEBPGP53567 150 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 LYG1Q8N1E2 194 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 OR2W1Q9Y3N9 320 aa13.29□□□□□ -0.28
CPSF1-213ENST00000620219 MALRD1Q5VYJ5 2156 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 ENSAO43768 121 aaKnown RBP13.28□□□□□ -0.28
CPSF1-213ENST00000620219 CGAP01215 116 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 OR10C1Q96KK4 312 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 ERVK-16P61578 105 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 LY6G6FQ5SQ64 297 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 C1orf174Q8IYL3 243 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 MUC15Q8N387 334 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 FGF23Q9GZV9 251 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-213ENST00000620219 SLC2A8Q9NY64 477 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 SSSCA1O60232 199 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 GNLYP22749 145 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 GRNP28799 593 aaKnown RBP13.28□□□□□ -0.28
CPSF1-213ENST00000620219 RPS16P62249 146 aaKnown RBP13.28□□□□□ -0.28
CPSF1-213ENST00000620219 Q6ZR03 302 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 RTBDNQ9BSG5 229 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-213ENST00000620219 NPTNQ9Y639 398 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 ABCA1O95477 2261 aa13.28□□□□□ -0.28
CPSF1-213ENST00000620219 ATMQ13315 3056 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 TRAV38-1A0A0B4J264 116 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 SMCO3A2RU48 225 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 ANKRD34BA5PLL1 514 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A10PA6NDY2 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A18PA6NE21 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A16PA6NEW6 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A20PA6NIJ5 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A8PA6NJQ4 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A7PA6NKC0 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 CEBPZOSA8MTT3 80 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A22PA8MWA6 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A12PA8MX19 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A5PA8MXJ8 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A23PA8MXZ1 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 ST8SIA3O43173 380 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A15PP0C7V4 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A13PP0C7W8 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A14PP0C7W9 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM90A24PP0C7X0 464 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 TUBG1P23258 451 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 DNM1P46Q6ZS02 220 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 WDR86Q86TI4 376 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 TMEM230Q96A57 120 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 MRGPRFQ96AM1 343 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 NRIP2Q9BQI9 281 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 GSX2Q9BZM3 304 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 RAB9BQ9NP90 201 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 TUBG2Q9NRH3 451 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 METRNQ9UJH8 293 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 KMT2EQ8IZD2 1858 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 ARHGAP21Q5T5U3 1957 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 LRRC10Q5BKY1 277 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 LINC00596Q86U02 117 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 FAM216BQ8N7L0 139 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 TIMD4Q96H15 378 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 CNTNAP3BQ96NU0 1288 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 NUP50Q9UKX7 468 aa13.27□□□□□ -0.28
CPSF1-213ENST00000620219 PPIAL4EA0A075B759 164 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 OOEPA6NGQ2 149 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 RNF212BA8MTL3 300 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PPIAL4DF5H284 164 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PSPNO60542 156 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 OR2A4O95047 310 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PPIAL4FP0DN26 164 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 IAPPP10997 89 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PSG2P11465 335 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 SRPXP78539 464 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 OR4A4PQ8NGN8 299 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 TMEM171Q8WVE6 324 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms