RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF626Q68DY1 528 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 PRR18Q8N4B5 295 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 DOPEY2Q9Y3R5 2298 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 ADAM20O43506 726 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 NDUFA2O43678 99 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 F12P00748 615 aaPredicted RBP11.82□□□□□ -0.52
USP39-220ENST00000613444 ECI1P42126 302 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 UCP3P55916 312 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 EDDM3BP56851 147 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 RRAS2P62070 204 aaPredicted RBP11.82□□□□□ -0.52
USP39-220ENST00000613444 CBX3Q13185 183 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 C6orf183Q5T699 404 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 ZNF295-AS1Q8N0V1 137 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 OR10J5Q8NHC4 309 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 IL1F10Q8WWZ1 152 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 C14orf79Q96F83 325 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 KCNIP1Q9NZI2 227 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 SLC25A10Q9UBX3 287 aaPredicted RBP11.82□□□□□ -0.52
USP39-220ENST00000613444 OPN4Q9UHM6 478 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 MALRD1Q5VYJ5 2156 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 IGKV1D-13A0A0B4J2D9 117 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 SNRPGP15A8MWD9 76 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 TRAPPC2P0DI81 140 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 TRAPPC2BP0DI82 140 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 IGKV1-13P0DP09 117 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 COX6B1P14854 86 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 ZBTB25P24278 435 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 FXYD4P59646 89 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 DHODHQ02127 395 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 KCNJ8Q15842 424 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 FAM53AQ6NSI3 398 aaPredicted RBP11.82□□□□□ -0.52
USP39-220ENST00000613444 SCGB3A2Q96PL1 93 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 CHODLQ9H9P2 273 aa11.82□□□□□ -0.52
USP39-220ENST00000613444 CENPEQ02224 2701 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 VPS13CQ709C8 3753 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 RPS2P15880 293 aaKnown RBP11.81□□□□□ -0.52
USP39-220ENST00000613444 GZMHP20718 246 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 EFNA4P52798 201 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 PPP1R1AQ13522 171 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 AVPI1Q5T686 147 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 FAHD2BQ6P2I3 314 aaPredicted RBP11.81□□□□□ -0.52
USP39-220ENST00000613444 TRAT1Q6PIZ9 186 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 MUC20Q8N307 709 aaPredicted RBP11.81□□□□□ -0.52
USP39-220ENST00000613444 GALMQ96C23 342 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 FAHD2AQ96GK7 314 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 TOLLIPQ9H0E2 274 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 PARP12Q9H0J9 701 aaKnown RBP11.81□□□□□ -0.52
USP39-220ENST00000613444 OR6C3Q9NZP0 311 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 ARID1AO14497 2285 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 DVL1O14640 695 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 CTSDP07339 412 aaPredicted RBP11.81□□□□□ -0.52
USP39-220ENST00000613444 DHRS2Q13268 280 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 C17orf58Q2M2W7 97 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 ZNF565Q8N9K5 539 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 CORO2AQ92828 525 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 TOMM40LQ969M1 308 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 ARL11Q969Q4 196 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 OR2W1Q9Y3N9 320 aa11.81□□□□□ -0.52
USP39-220ENST00000613444 CREBL2O60519 120 aaPredicted RBP11.8□□□□□ -0.52
USP39-220ENST00000613444 ZNF728P0DKX0 622 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 PGAM2P15259 253 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 AKR1C4P17516 323 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 GNRHRP30968 328 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 SUPT4H1P63272 117 aaKnown RBP11.8□□□□□ -0.52
USP39-220ENST00000613444 FCN2Q15485 313 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 C4orf46Q504U0 113 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 ZNF841Q6ZN19 808 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 RFESDQ8TAC1 157 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 ZNF431Q8TF32 576 aaPredicted RBP11.8□□□□□ -0.52
USP39-220ENST00000613444 RSRP1Q9BUV0 290 aa11.8□□□□□ -0.52
USP39-220ENST00000613444 GPN1Q9HCN4 374 aaPredicted RBP11.8□□□□□ -0.52
USP39-220ENST00000613444 C9orf170A2RU37 121 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 NDUFB7P17568 137 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 TMEM33P57088 247 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 TAS2R31P59538 309 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 UBE2MP61081 183 aaKnown RBP11.79□□□□□ -0.52
USP39-220ENST00000613444 HERV-K104P61576 105 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 HTD2P86397 168 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 GNMTQ14749 295 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 TMEM128Q5BJH2 165 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 CD276Q5ZPR3 534 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 OR11H7Q8NGC8 314 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 OR52L2PQ8NGH6 319 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 ST6GAL2Q96JF0 529 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 LINC00574Q9H8X3 128 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 C19orf12Q9NSK7 152 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 RDH8Q9NYR8 311 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 ZNF69Q9UC07 566 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 NBPF19A0A087WUL8 3843 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 FAM172BPA6NC97 362 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 F2RL2O00254 374 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 PPIHO43447 177 aaKnown RBP11.79□□□□□ -0.52
USP39-220ENST00000613444 NDUFB3O43676 98 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 HLA-AP01891 365 aaKnown RBP11.79□□□□□ -0.52
USP39-220ENST00000613444 SULT1A3P0DMM9 295 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 SULT1A4P0DMN0 295 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 COL8A1P27658 744 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 IL2RGP31785 369 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 CEACAM6P40199 344 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 LOXL3P58215 753 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms