RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF2Q9BSG1 426 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-209ENST00000597423 CABLES2Q9BTV7 478 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 SSBP3Q9BWW4 388 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-209ENST00000597423 BPESC1Q9GZL8 116 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 HELZ2Q9BYK8 2649 aaKnown RBP12.63□□□□□ -0.39
TRIM28-209ENST00000597423 TANC2Q9HCD6 1990 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 F5H0A9 414 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-209ENST00000597423 H2AFB2P0C5Z0 115 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 SLC25A16P16260 332 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 BTCP35070 178 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 RAG2P55895 527 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 SURF2Q15527 256 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-209ENST00000597423 TMEM200BQ69YZ2 307 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 Q6ZPA2 131 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 FAM185AQ8N0U4 392 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 ZDHHC22Q8N966 263 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 ZFAND1Q8TCF1 268 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF714Q96N38 554 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 MARVELD1Q9BSK0 173 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 DCTN5Q9BTE1 182 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 LINC00574Q9H8X3 128 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 OR2S2Q9NQN1 319 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 CALYQ9NYX4 217 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF69Q9UC07 566 aa12.62□□□□□ -0.39
TRIM28-209ENST00000597423 TENM4Q6N022 2769 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 LOC105371242A0A075B767 164 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 INMT-MINDY4F8WBC2 141 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 C15orf65H3BRN8 121 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 RLN1P04808 185 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF728P0DKX0 622 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 CGB3P0DN86 165 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 CGB7P0DN87 165 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 PGAM2P15259 253 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 FPR2P25090 351 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 CEACAM6P40199 344 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 CLEC12BQ2HXU8 276 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 C11orf88Q6PI97 169 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 OR52M1Q8NGK5 317 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 OR1L1Q8NH94 360 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 FAM216AQ8WUB2 273 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 MMP28Q9H239 520 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 NARFLQ9H6Q4 476 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 C19orf12Q9NSK7 152 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 JPT1Q9UK76 154 aa12.61□□□□□ -0.39
TRIM28-209ENST00000597423 HRNRQ86YZ3 2850 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-209ENST00000597423 USF3Q68DE3 2245 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 F2RL2O00254 374 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 FOXH1O75593 365 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 IGHV2-5P01817 119 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 LIPFP07098 398 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 NFYAP23511 347 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 S100GP29377 79 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 SSTR5P35346 364 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 UCP3P55916 312 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF660Q6AZW8 331 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 PRSS57Q6UWY2 283 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 Q6ZNX1 250 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 LHFPL1Q86WI0 220 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 H1FOOQ8IZA3 346 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 RFESDQ8TAC1 157 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 C8orf46Q8TAG6 207 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 EDARADDQ8WWZ3 215 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 NUDT15Q9NV35 164 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 IDI2-AS1Q9NZ38 188 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 GNG12Q9UBI6 72 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 RPUSD1Q9UJJ7 312 aaKnown RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 C14orf166Q9Y224 244 aaKnown RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 OR2W1Q9Y3N9 320 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 RBM7Q9Y580 266 aaKnown RBP12.6□□□□□ -0.39
TRIM28-209ENST00000597423 LRBAP50851 2863 aa12.6□□□□□ -0.39
TRIM28-209ENST00000597423 TRAV6A0A075B6T7 132 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 PPIAL4CA0A0B4J2A2 164 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 IGKV1-6A0A0C4DH72 117 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 VWC2LB2RUY7 222 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 SLC22A5O76082 557 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 PPYP01298 95 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 PPIAL4GP0DN37 164 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 SPNP16150 400 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 AADACP22760 399 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 LUMP51884 338 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-209ENST00000597423 TAS2R31P59538 309 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 HERPUD1Q15011 391 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 C17orf58Q2M2W7 97 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 LY6G6FQ5SQ64 297 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 HIST2H2BCQ6DN03 193 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 SLC38A6Q8IZM9 456 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 OR13C8Q8NGS7 320 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 CLDND2Q8NHS1 167 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 MOB3AQ96BX8 217 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 TMPRSS13Q9BYE2 586 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 TOLLIPQ9H0E2 274 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 C20orf85Q9H1P6 137 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 RDH8Q9NYR8 311 aa12.59□□□□□ -0.39
TRIM28-209ENST00000597423 OR5H14A6NHG9 310 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 ARPC1BO15143 372 aaKnown RBP12.58□□□□□ -0.4
TRIM28-209ENST00000597423 YPEL1O60688 119 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 PRAF2O60831 178 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 PEX14O75381 377 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 UTP20O75691 2785 aaKnown RBP12.58□□□□□ -0.4
TRIM28-209ENST00000597423 TUSC2O75896 110 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms