RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ORC5O43913 435 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 GAPDHP04406 335 aaKnown RBP16.2■□□□□ 0.18
SHMT1-209ENST00000582653 ZNF816Q0VGE8 651 aaPredicted RBP16.2■□□□□ 0.18
SHMT1-209ENST00000582653 INSL4Q14641 139 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 SYT6Q5T7P8 510 aaPredicted RBP16.2■□□□□ 0.18
SHMT1-209ENST00000582653 RAB12Q6IQ22 244 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 TMEM104Q8NE00 496 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 SELENOIQ9C0D9 397 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 GFOD1Q9NXC2 390 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 ETAA1Q9NY74 926 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 LINC00527Q9UJ94 153 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 TRAPPC2LQ9UL33 140 aa16.2■□□□□ 0.18
SHMT1-209ENST00000582653 PSMB11A5LHX3 300 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 C12orf77C9JDV5 145 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 SLC31A2O15432 143 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 PRR18Q8N4B5 295 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 MRPS24Q96EL2 167 aaKnown RBP16.19■□□□□ 0.18
SHMT1-209ENST00000582653 SPACA1Q9HBV2 294 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 FKBP14Q9NWM8 211 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 PEX16Q9Y5Y5 336 aa16.19■□□□□ 0.18
SHMT1-209ENST00000582653 LINC01548A6NM66 108 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 FGF16O43320 207 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 CRTAPO75718 401 aaPredicted RBP16.18■□□□□ 0.18
SHMT1-209ENST00000582653 MPIG6BO95866 241 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 CD1AP06126 327 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 MGMTP16455 207 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 C5orf24Q7Z6I8 188 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 CDH26Q8IXH8 852 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 LINC00311Q8N616 119 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 CHPT1Q8WUD6 406 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 TFAP2CQ92754 450 aa16.18■□□□□ 0.18
SHMT1-209ENST00000582653 EAF1Q96JC9 268 aaPredicted RBP16.18■□□□□ 0.18
SHMT1-209ENST00000582653 UBE2QL1A1L167 161 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 RCC1P18754 421 aaPredicted RBP16.17■□□□□ 0.18
SHMT1-209ENST00000582653 ZNF134P52741 427 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 EBI3Q14213 229 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 SIGIRRQ6IA17 410 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 OR10V1Q8NGI7 309 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 OR1L1Q8NH94 360 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 RTN4IP1Q8WWV3 396 aaPredicted RBP16.17■□□□□ 0.18
SHMT1-209ENST00000582653 ST6GALNAC6Q969X2 333 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 FAM46BQ96A09 425 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 ZFP57Q9NU63 452 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 ERGIC3Q9Y282 383 aa16.17■□□□□ 0.18
SHMT1-209ENST00000582653 NCBP2LA6PVI3 153 aaKnown RBP16.16■□□□□ 0.18
SHMT1-209ENST00000582653 SERPINE3A8MV23 424 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 ZNF736B4DX44 427 aaPredicted RBP16.16■□□□□ 0.18
SHMT1-209ENST00000582653 PTGES3LE9PB15 166 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 K7EIL1 84 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 IGHG2P01859 326 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 HBZP02008 142 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 GP2P55259 537 aaKnown RBP16.16■□□□□ 0.18
SHMT1-209ENST00000582653 FAM27D1Q5T7N8 215 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 GAPTQ8N292 157 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 LINC00482Q8N8I6 264 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 C8orf31Q8N9H6 132 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 ZNF439Q8NDP4 499 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 Q96M66 194 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 GNG12Q9UBI6 72 aa16.16■□□□□ 0.18
SHMT1-209ENST00000582653 SPINT2O43291 252 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 CDK1P06493 297 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 FUT3P21217 361 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 KRTAP10-11P60412 298 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 ACSM3Q53FZ2 586 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 CT45A1Q5HYN5 189 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 UNQ9370/PRO34162Q6UXP9 181 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 C18orf65Q6ZTR6 163 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 SLC35E3Q7Z769 313 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 MRPL41Q8IXM3 137 aaKnown RBP16.15■□□□□ 0.18
SHMT1-209ENST00000582653 Q8N6K4 173 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 NKAIN3Q8N8D7 197 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 OR51D1Q8NGF3 324 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 CT45A3Q8NHU0 189 aa16.15■□□□□ 0.18
SHMT1-209ENST00000582653 NKX1-2Q9UD57 310 aaPredicted RBP16.15■□□□□ 0.18
SHMT1-209ENST00000582653 FAM90A10PA6NDY2 464 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 FAM90A7PA6NKC0 464 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 FAM90A23PA8MXZ1 464 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 SC5DO75845 299 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 IL3RAP26951 378 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 MAPK3P27361 379 aaPredicted RBP16.14■□□□□ 0.17
SHMT1-209ENST00000582653 SLC6A1P30531 599 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 THBS3P49746 956 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 RPL23AP62750 156 aaKnown RBP16.14■□□□□ 0.17
SHMT1-209ENST00000582653 GABPB1Q06547 395 aaPredicted RBP16.14■□□□□ 0.17
SHMT1-209ENST00000582653 EGFEM1PQ0D2K5 195 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 GPR50Q13585 617 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 C6orf183Q5T699 404 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 OR10K2Q6IF99 312 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 SLC25A48Q6ZT89 311 aaKnown RBP16.14■□□□□ 0.17
SHMT1-209ENST00000582653 IZUMO1Q8IYV9 350 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 COMMD1Q8N668 190 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 OR2T10Q8NGZ9 312 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 UQCC2Q9BRT2 126 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 TMED9Q9BVK6 235 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 TAF9BQ9HBM6 251 aa16.14■□□□□ 0.17
SHMT1-209ENST00000582653 SLC35B1P78383 322 aa16.13■□□□□ 0.17
SHMT1-209ENST00000582653 DEFB121Q5J5C9 76 aa16.13■□□□□ 0.17
SHMT1-209ENST00000582653 C6orf141Q5SZD1 244 aa16.13■□□□□ 0.17
SHMT1-209ENST00000582653 ETV3LQ6ZN32 361 aa16.13■□□□□ 0.17
SHMT1-209ENST00000582653 LRRTM1Q86UE6 522 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms