RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LURAP1Q96LR2 239 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 OR8B2Q96RD0 313 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 KCNIP1Q9NZI2 227 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 F5H0A9 414 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-207ENST00000580002 IL2RGP31785 369 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 NPY4RP50391 375 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 AADACL3Q5VUY0 350 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 FAM185AQ8N0U4 392 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 OR4A4PQ8NGN8 299 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 SLC23A1Q9UHI7 598 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 ITPR2Q14571 2701 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 DOCK11Q5JSL3 2073 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 LMO4P61968 165 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 DHRS11Q6UWP2 260 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 Q6ZNX1 250 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 LDLRAD3Q86YD5 345 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 ZNF565Q8N9K5 539 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 DEDD2Q8WXF8 326 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 GINS4Q9BRT9 223 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 CABLES2Q9BTV7 478 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 BEX2Q9BXY8 128 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 BEX1Q9HBH7 125 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 BARX1Q9HBU1 254 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-207ENST00000580002 NUDT15Q9NV35 164 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 CALYQ9NYX4 217 aa20.71■□□□□ 0.91
SHMT1-207ENST00000580002 TRBV6-7A0A0A0MS04 114 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 IGHV4-61A0A0C4DH41 118 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 VWC2LB2RUY7 222 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 IGHV3-7P01780 117 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 AADACP22760 399 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 ZFP36P26651 326 aaKnown RBP20.7■□□□□ 0.9
SHMT1-207ENST00000580002 DEFB113Q30KQ7 82 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 CLEC2AQ6UVW9 174 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 LHFPL1Q86WI0 220 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 OR6C3Q9NZP0 311 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 CLN8Q9UBY8 286 aa20.7■□□□□ 0.9
SHMT1-207ENST00000580002 TRGV10A0A0A0MS01 117 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 C22orf46C9J442 243 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 NDUFB6O95139 128 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 IGHV2-5P01817 119 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 DNASE1P24855 282 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 BAMBIQ13145 260 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 C6orf183Q5T699 404 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 ARRDC1Q8N5I2 433 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 OR10V1Q8NGI7 309 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 OR6F1Q8NGZ6 308 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 TERB2Q8NHR7 220 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 MARCH1Q8TCQ1 289 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 NCOR1P1Q9H4R4 102 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 SLC2A8Q9NY64 477 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 VSIG4Q9Y279 399 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 FUOMA2VDF0 154 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 POM121CA8CG34 1229 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 GZMHP20718 246 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 NLRC3Q7RTR2 1065 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 CORO2AQ92828 525 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 PIMREGQ9BSJ6 248 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 SCP2D1Q9UJQ7 156 aa20.69■□□□□ 0.9
SHMT1-207ENST00000580002 hCG_2014768A0A024R1R8 64 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 hADV38S2A0JD32 116 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 ARPC1BO15143 372 aaKnown RBP20.68■□□□□ 0.9
SHMT1-207ENST00000580002 HEXAP06865 529 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 PI3P19957 117 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 DLX1P56177 255 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 FXYD4P59646 89 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 PLET1Q6UQ28 207 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 LEAP2Q969E1 77 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 GALMQ96C23 342 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 PRRT1Q99946 306 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 C20orf85Q9H1P6 137 aa20.68■□□□□ 0.9
SHMT1-207ENST00000580002 YLPM1P49750 1951 aaKnown RBP20.68■□□□□ 0.9
SHMT1-207ENST00000580002 PDZD2O15018 2839 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 IGKV1D-13A0A0B4J2D9 117 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 KBTBD11-OT1A0A1B0GTJ5 212 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 FAM172BPA6NC97 362 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 IGKV1-13P0DP09 117 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 PPP1CCP36873 323 aaKnown RBP20.67■□□□□ 0.9
SHMT1-207ENST00000580002 CEACAM6P40199 344 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 GNB2P62879 340 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 PRB3Q04118 309 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-207ENST00000580002 CLEC12BQ2HXU8 276 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 PRAMEF5Q5TYX0 476 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 GIMAP1Q8WWP7 306 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 MGAT4AQ9UM21 535 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 LINC00312Q9Y6C7 94 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 A0A0B4J293 547 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 MEF2CQ06413 473 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-207ENST00000580002 H1FOOQ8IZA3 346 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-207ENST00000580002 OR10J5Q8NHC4 309 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 SSBP3Q9BWW4 388 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-207ENST00000580002 FXYD6Q9H0Q3 95 aa20.67■□□□□ 0.9
SHMT1-207ENST00000580002 NPIPB11E5RHQ5 1161 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 ANXA7P20073 488 aaKnown RBP20.66■□□□□ 0.9
SHMT1-207ENST00000580002 DLX6P56179 175 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 LOXL3P58215 753 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 RBMS2Q15434 407 aaKnown RBP20.66■□□□□ 0.9
SHMT1-207ENST00000580002 TOMM40LQ969M1 308 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 MARVELD1Q9BSK0 173 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 OR2S2Q9NQN1 319 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 BEX4Q9NWD9 120 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms