RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 SDCBPO00560 298 aaPredicted RBP8.48□□□□□ -1.05
SS18-210ENST00000578700 PTBP3O95758 552 aaKnown RBP8.48□□□□□ -1.05
SS18-210ENST00000578700 OR2H2O95918 312 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 HLA-AP01891 365 aaKnown RBP8.48□□□□□ -1.05
SS18-210ENST00000578700 OR4E1P0C645 316 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 AKR1C4P17516 323 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 VAMP1P23763 118 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 FPR2P25090 351 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 KCNJ3P48549 501 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 PPOXP50336 477 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 NPY4RP50391 375 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 HERV-K104P61576 105 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 FCN2Q15485 313 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 ABCA11PQ4W5N1 156 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 ACP7Q6ZNF0 438 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 ZNF826PQ6ZT77 177 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 SLC25A42Q86VD7 318 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 TCTE3Q8IZS6 198 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 UXS1Q8NBZ7 420 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 OR13C8Q8NGS7 320 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 MARCH1Q8TCQ1 289 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 SEC22CQ9BRL7 303 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 ZNF2Q9BSG1 426 aaPredicted RBP8.48□□□□□ -1.05
SS18-210ENST00000578700 WDR13Q9H1Z4 485 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 MS4A5Q9H3V2 200 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 HES4Q9HCC6 221 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 DECR2Q9NUI1 292 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 HIF1ANQ9NWT6 349 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 KCNIP1Q9NZI2 227 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 IL36RNQ9UBH0 155 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 MGAT4CQ9UBM8 478 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 TRAPPC2LQ9UL33 140 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 PCDHB10Q9UN67 800 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 NPTNQ9Y639 398 aa8.48□□□□□ -1.05
SS18-210ENST00000578700 TRBV6-6A0A0A6YYG2 114 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 TRAV24A0A0B4J272 114 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 TMEM30CPA0ZSE6 113 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 TMEM89A2RUT3 159 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 FAM172BPA6NC97 362 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 OR2AT4A6NND4 320 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 B4DSR2 109 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 TRIM77I1YAP6 450 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 SLC33A1O00400 549 aaPredicted RBP8.47□□□□□ -1.05
SS18-210ENST00000578700 FABP7O15540 132 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 NAPSAO96009 420 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 HPXP02790 462 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 GSTT2P0CG29 244 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 ZNF728P0DKX0 622 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 SULT1A3P0DMM9 295 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 SULT1A4P0DMN0 295 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 S100GP29377 79 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 CFHR2P36980 270 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 GATA4P43694 442 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 IL13RA1P78552 427 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 EFNB3Q15768 340 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 MPPED2Q15777 294 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 TMEM128Q5BJH2 165 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 LPCAT3Q6P1A2 487 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 Q6P435 159 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 SLC36A1Q7Z2H8 476 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 MOGAT3Q86VF5 341 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 C11orf53Q8IXP5 236 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 C12orf45Q8N5I9 185 aaPredicted RBP8.47□□□□□ -1.05
SS18-210ENST00000578700 SPICQ8N5J4 248 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 BOLLQ8N9W6 283 aaKnown RBP8.47□□□□□ -1.05
SS18-210ENST00000578700 OR5T2Q8NGG2 359 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 ASB13Q8WXK3 278 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 DYRK2Q92630 601 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 ST6GAL2Q96JF0 529 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 DMRTB1Q96MA1 342 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 PHB2Q99623 299 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 RANGRFQ9HD47 186 aaPredicted RBP8.47□□□□□ -1.05
SS18-210ENST00000578700 Q9N2K0 584 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 ZNF581Q9P0T4 197 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 RNF7Q9UBF6 113 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 FBXO9Q9UK97 447 aaPredicted RBP8.47□□□□□ -1.05
SS18-210ENST00000578700 WIPI2Q9Y4P8 454 aa8.47□□□□□ -1.05
SS18-210ENST00000578700 WNK2Q9Y3S1 2297 aa8.46□□□□□ -1.05
SS18-210ENST00000578700 VWFP04275 2813 aa8.46□□□□□ -1.05
SS18-210ENST00000578700 MEIKINA0A087WXM9 373 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 CEACAM18A8MTB9 384 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 SRRM5B3KS81 715 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 BET1O15155 118 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 SNAPC5O75971 98 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 IGHV1-46P01743 117 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 ADH4P08319 380 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 VSIG10L2P0DP72 767 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 CD34P28906 385 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 FCGR2CP31995 323 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 PRDX2P32119 198 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 GPR6P46095 362 aaPredicted RBP8.46□□□□□ -1.06
SS18-210ENST00000578700 COMPP49747 757 aaPredicted RBP8.46□□□□□ -1.06
SS18-210ENST00000578700 SEC61A1P61619 476 aaKnown RBP8.46□□□□□ -1.06
SS18-210ENST00000578700 MSMPQ1L6U9 139 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 FAM209AQ5JX71 171 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 DHRS11Q6UWP2 260 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 LYG2Q86SG7 212 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 LHFPL1Q86WI0 220 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 SGPP2Q8IWX5 399 aa8.46□□□□□ -1.06
SS18-210ENST00000578700 C1orf87Q8N0U7 546 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms