RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SEBOXQ9HB31 216 aaPredicted RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 PLSCR3Q9NRY6 295 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ERVK13-1Q9NX77 482 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 MGAT4AQ9UM21 535 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 GTF2A1LQ9UNN4 478 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 NUBP2Q9Y5Y2 271 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ALG5Q9Y673 324 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 DNAH7Q8WXX0 4024 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 IGHV2-26A0A0B4J1V2 119 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 IGKV1-12A0A0C4DH73 117 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 FAM230AA0A1W2PPH8 454 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 E9PQ18 207 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 AIPO00170 330 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 PIN1P1O15428 100 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 XPNPEP2O43895 674 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 TMEM127O75204 238 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 HAND1O96004 215 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 IGKV1D-12P01611 117 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 BCL3P20749 454 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 GALP22466 123 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 DUSP1P28562 367 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MAP2K4P45985 399 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 OR3A1P47881 315 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 RFX2P48378 723 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MEOX2P50222 304 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 AKR1D1P51857 326 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 EDDM3BP56851 147 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ACTA2P62736 377 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ACTG2P63267 376 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ACTC1P68032 377 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ACTA1P68133 377 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ZNF85Q03923 595 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MEF2CQ06413 473 aaPredicted RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 FGL1Q08830 312 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 BTN1A1Q13410 526 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ZNF146Q15072 292 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 RNF212Q495C1 297 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MINOS1Q5TGZ0 78 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 C10orf99Q6UWK7 81 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 SLC25A26Q70HW3 274 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 REC114Q7Z4M0 266 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 OR13D1Q8NGV5 346 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 CNIH3Q8TBE1 160 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MRAPQ8TCY5 172 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 SLC25A46Q96AG3 418 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 FOXRED1Q96CU9 486 aaPredicted RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 R3HDM4Q96D70 268 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ADAT3Q96EY9 351 aaPredicted RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 KCTD7Q96MP8 289 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 ZNF714Q96N38 554 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 OR5M11Q96RB7 305 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 IL4I1Q96RQ9 567 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 TBX5Q99593 518 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MGLLQ99685 303 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 PRRG3Q9BZD7 231 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 PRSS22Q9GZN4 317 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 CHST6Q9GZX3 395 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 TMEM133Q9H2Q1 129 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 EXOSC4Q9NPD3 245 aaKnown RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 NECAP2Q9NVZ3 263 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 SLC23A1Q9UHI7 598 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 HHLA2Q9UM44 414 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MRPS7Q9Y2R9 242 aaKnown RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 RPL36Q9Y3U8 105 aaKnown RBP5.37□□□□□ -1.55
VPS53-213ENST00000572334 HILPDAQ9Y5L2 63 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 LINC00312Q9Y6C7 94 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 MINOS1-NBL1R4GNA1 71 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 TENM3Q9P273 2699 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 RYR3Q15413 4870 aa5.37□□□□□ -1.55
VPS53-213ENST00000572334 TRBV2A0A0J9YWF9 115 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 LOC107986453A0A1B0GWG9 222 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 hCG_1809904A0A1W2PP81 198 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PPE2 198 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PR64 198 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PRV1 198 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 SH2D7A6NKC9 451 aaPredicted RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 LY6LH3BQJ8 138 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 J3QRE1 110 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 K7EIL1 84 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 SULT1C2O00338 296 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 SYT7O43581 403 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 ENTPD6O75354 484 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 IGLV1-47P01700 117 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 OR2T7P0C7T2 308 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 HSMCR30P0CW71 290 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 CALCBP10092 127 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 IGLL1P15814 213 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 CD24P25063 80 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 LMO1P25800 156 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 HTR1FP30939 366 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 FUT6P51993 359 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 LOXL3P58215 753 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 AP3S2P59780 193 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 CD81P60033 236 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 NANOS3P60323 173 aaKnown RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 KRTAP10-11P60412 298 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 MLLT11Q13015 90 aaPredicted RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 EDDM3AQ14507 147 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 MED22Q15528 200 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 KLHL22Q53GT1 634 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms