RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HMGN3Q15651 99 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 PXDC1Q5TGL8 231 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 EIF5AL1Q6IS14 154 aaKnown RBP17.09■□□□□ 0.33
CLN3-230ENST00000568076 ATRAIDQ6UW56 229 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 WDR82Q6UXN9 313 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 CLEC18CQ8NCF0 446 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 ARL11Q969Q4 196 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 ARV1Q9H2C2 271 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 TFF1P04155 84 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 VDAC1P21796 283 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 LMO1P25800 156 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 NKX2-1P43699 371 aaPredicted RBP17.09■□□□□ 0.33
CLN3-230ENST00000568076 MSMPQ1L6U9 139 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 CXorf66Q5JRM2 361 aaPredicted RBP17.09■□□□□ 0.33
CLN3-230ENST00000568076 OR51H1Q8NH63 302 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 SAT2Q96F10 170 aaPredicted RBP17.09■□□□□ 0.33
CLN3-230ENST00000568076 MMP26Q9NRE1 261 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 UFSP2Q9NUQ7 469 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 WASF3Q9UPY6 502 aa17.09■□□□□ 0.33
CLN3-230ENST00000568076 GVINP1Q7Z2Y8 2422 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 A6NLC8 198 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 GCH1P30793 250 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 BTN1A1Q13410 526 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 GNMTQ14749 295 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 ACP7Q6ZNF0 438 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 FAM169BQ8N8A8 192 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 IL22RA2Q969J5 263 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 NARS2Q96I59 477 aaKnown RBP17.08■□□□□ 0.33
CLN3-230ENST00000568076 SPIN2AQ99865 258 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 SPIN2BQ9BPZ2 258 aa17.08■□□□□ 0.33
CLN3-230ENST00000568076 MUC6Q6W4X9 2439 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 PROB1E7EW31 1015 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 MED6O75586 246 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 HEXAP06865 529 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 ARHGDIBP52566 201 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 MAGT1Q9H0U3 335 aa17.08■□□□□ 0.32
CLN3-230ENST00000568076 CEP250Q9BV73 2442 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 A0A0G2JRQ6 117 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 A0A1B0GWJ7 208 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 FAM24AA6NFZ4 105 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 ABCD4O14678 606 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 PSG2P11465 335 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 C1orf185Q5T7R7 199 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 FIP1L1Q6UN15 594 aaKnown RBP17.07■□□□□ 0.32
CLN3-230ENST00000568076 SNIP1Q8TAD8 396 aaKnown RBP17.07■□□□□ 0.32
CLN3-230ENST00000568076 HRH4Q9H3N8 390 aa17.07■□□□□ 0.32
CLN3-230ENST00000568076 TMEM218A2RU14 115 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 PTBP3O95758 552 aaKnown RBP17.06■□□□□ 0.32
CLN3-230ENST00000568076 EWSR1Q01844 656 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLN3-230ENST00000568076 OR2C3Q8N628 320 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 S100PBPQ96BU1 408 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 SPEF1Q9Y4P9 236 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 NUDT19A8MXV4 375 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 HSPA12AO43301 675 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 SSSCA1O60232 199 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 WNT2P09544 360 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 ADCYAP1P18509 176 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 S100GP29377 79 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 ZNF83P51522 516 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 ID3Q02535 119 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 PJVKQ0ZLH3 352 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 ALKBH2Q6NS38 261 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 LRP11Q86VZ4 500 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 LRFN3Q9BTN0 628 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 GLS2Q9UI32 602 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 METRNQ9UJH8 293 aa17.06■□□□□ 0.32
CLN3-230ENST00000568076 TMEM30CPA0ZSE6 113 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 IGSF23A1L1A6 192 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 TMEM50AO95807 157 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 IGKV1-39P01597 117 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 IGKV1D-39P04432 117 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 CEACAM6P40199 344 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 ASCL1P50553 236 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 IL34Q6ZMJ4 242 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 ODF3L1Q8IXM7 274 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 OR1L1Q8NH94 360 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 LRRC46Q96FV0 321 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 ABHD14BQ96IU4 210 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 GINS3Q9BRX5 216 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 PPP1R3CQ9UQK1 317 aa17.05■□□□□ 0.32
CLN3-230ENST00000568076 NXPH3O95157 252 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 CRYABP02511 175 aaKnown RBP17.04■□□□□ 0.32
CLN3-230ENST00000568076 OR8U9P0C7N5 309 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 TIMP3P35625 211 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 ID4P47928 161 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 AESQ08117 197 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 TIMM23BQ5SRD1 257 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 BTNL8Q6UX41 500 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 OR8U1Q8NH10 309 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 PRR7Q8TB68 274 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 GPR146Q96CH1 333 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 COQ2Q96H96 371 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 AKR1E2Q96JD6 320 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 TMEM231Q9H6L2 316 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 BORCS7-ASMTA0A0B4J1R7 106 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 C12orf77C9JDV5 145 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 SERPINE2P07093 398 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 CAV2P51636 162 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 DEFA5Q01523 94 aa17.04■□□□□ 0.32
CLN3-230ENST00000568076 SLC35E4Q6ICL7 350 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms