RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 HFEQ30201 348 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 C3orf36Q3SXR2 165 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 ACSF3Q4G176 576 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 SMUG1Q53HV7 270 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SPATA46Q5T0L3 261 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MBNL2Q5VZF2 373 aaKnown RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 C20orf204Q6ZNR8 217 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 TMPRSS7Q7RTY8 843 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 VASH2Q86V25 355 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MYPOPQ86VE0 399 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 STX12Q86Y82 276 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 FAM90A1Q86YD7 464 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 WDR31Q8NA23 367 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 C9orf106Q8NAJ2 232 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 HSD17B11Q8NBQ5 300 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 OR10Z1Q8NGY1 313 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 OR8U1Q8NH10 309 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MBD3L2Q8NHZ7 208 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 KLF14Q8TD94 323 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 GPR146Q96CH1 333 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PARD6GQ9BYG4 376 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 OR51B6Q9H340 312 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 TMEM231Q9H6L2 316 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PARD6AQ9NPB6 346 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PLSCR4Q9NRQ2 329 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SMCO4Q9NRQ5 59 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 COA4Q9NYJ1 87 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 ERRFI1Q9UJM3 462 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 TRAPPC2LQ9UL33 140 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PROCRQ9UNN8 238 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PRELID3BQ9Y3B1 194 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 FAM96BQ9Y3D0 163 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 RNF115Q9Y4L5 304 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MMP24Q9Y5R2 645 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MED12Q93074 2177 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 A0A1W2PR80 420 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 KIAA1324LA8MWY0 1029 aaPredicted RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 CDIPTO14735 213 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 SIGLEC5O15389 551 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 NUPL2O15504 423 aaKnown RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 TXNL1O43396 289 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 WDR1O75083 606 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 LYZL6O75951 148 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 LY86O95711 162 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 PTBP3O95758 552 aaKnown RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 IFNA5P01569 189 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 PRH1P02810 166 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 PSG2P11465 335 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 FOLR2P14207 255 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 MPV17P39210 176 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 DYNLT3P51808 116 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 PAX9P55771 341 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 CATR1Q13166 79 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 IGFBP7Q16270 282 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 SMIM21Q3B7S5 101 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 ZNF718Q3SXZ3 478 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 CXorf66Q5JRM2 361 aaPredicted RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 IGFL3Q6UXB1 125 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 ACP7Q6ZNF0 438 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 TMEM182Q6ZP80 229 aaPredicted RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 ODF3L1Q8IXM7 274 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 ZADH2Q8N4Q0 377 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 ZNF645Q8N7E2 425 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 C15orf54Q8N8G6 183 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 CNEP1R1Q8N9A8 125 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 OR2G3Q8NGZ4 309 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 RNASE11Q8TAA1 199 aaKnown RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 FAM213BQ8TBF2 198 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 SCRT1Q9BWW7 348 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 TUBA4BQ9H853 241 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 UNKLQ9H9P5 680 aaKnown RBP5.28□□□□□ -1.56
CLN3-223ENST00000566472 OR1A1Q9P1Q5 309 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 KIAA1456Q9P272 454 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 RNF150Q9ULK6 438 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 LAMP3Q9UQV4 416 aa5.28□□□□□ -1.56
CLN3-223ENST00000566472 SZT2Q5T011 3432 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TRAV1-1A0A0B4J248 108 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 A0A0G2JRQ6 117 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 SPAARA0A1B0GVQ0 90 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 XIRP2A4UGR9 3374 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 OR5H1A6NKK0 313 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 PROB1E7EW31 1015 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 ATP6V1G2-DDX39BF2Z307 99 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 AGPAT2O15120 278 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 MLNRO43193 412 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 ZNHIT1O43257 154 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TNFSF12O43508 249 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 SYNGR2O43760 224 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 CHST1O43916 411 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TIMM8AO60220 97 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 TMEM50AO95807 157 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 CGAP01215 116 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 IGKV1-39P01597 117 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 IGLV2-14P01704 120 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 IGKV1D-39P04432 117 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 CECR9P0C854 216 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 GCH1P30793 250 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 PPT1P50897 306 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 NOVA1P51513 510 aaKnown RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 ARHGDIBP52566 201 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms