RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NDNFQ8TB73 568 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 ZNF596Q8TC21 504 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 MRPL30Q8TCC3 161 aaKnown RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 KIRREL1Q96J84 757 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 CMSS1Q9BQ75 279 aaKnown RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 NAA50Q9GZZ1 169 aaKnown RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 RIMS4Q9H426 269 aaPredicted RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 ZMAT3Q9HA38 289 aaKnown RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 ABRACLQ9P1F3 81 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 AK3Q9UIJ7 227 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 POM121CA8CG34 1229 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 SCGNO76038 276 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 CD3GP09693 182 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 CGB3P0DN86 165 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 CGB7P0DN87 165 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 GDNFP39905 211 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 PRRX1P54821 245 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 TMEM50BP56557 158 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 ARL6IP1Q15041 203 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 ZNF626Q68DY1 528 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 SLC16A12Q6ZSM3 486 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 OR11H6Q8NGC7 330 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 DUX5Q96PT3 197 aa14.01□□□□□ -0.17
CLN3-217ENST00000565354 TBL2Q9Y4P3 447 aaKnown RBP14.01□□□□□ -0.17
CLN3-217ENST00000565354 BTBD17A6NE02 478 aa14□□□□□ -0.17
CLN3-217ENST00000565354 DNAJC9-AS1A6NH13 148 aa14□□□□□ -0.17
CLN3-217ENST00000565354 NPIPB11E5RHQ5 1161 aa14□□□□□ -0.17
CLN3-217ENST00000565354 SDCBPO00560 298 aaPredicted RBP14□□□□□ -0.17
CLN3-217ENST00000565354 RCC1P18754 421 aaPredicted RBP14□□□□□ -0.17
CLN3-217ENST00000565354 MOGAT2Q3SYC2 334 aa14□□□□□ -0.17
CLN3-217ENST00000565354 BAIAP2L2Q6UXY1 529 aa14□□□□□ -0.17
CLN3-217ENST00000565354 MOB1BQ7L9L4 216 aa14□□□□□ -0.17
CLN3-217ENST00000565354 GAPTQ8N292 157 aa14□□□□□ -0.17
CLN3-217ENST00000565354 SLC25A46Q96AG3 418 aa14□□□□□ -0.17
CLN3-217ENST00000565354 CYYR1Q96J86 154 aa14□□□□□ -0.17
CLN3-217ENST00000565354 TAF9BQ9HBM6 251 aa14□□□□□ -0.17
CLN3-217ENST00000565354 ZNF286AQ9HBT8 521 aa14□□□□□ -0.17
CLN3-217ENST00000565354 C12orf4Q9NQ89 552 aa14□□□□□ -0.17
CLN3-217ENST00000565354 TNFRSF19Q9NS68 423 aa14□□□□□ -0.17
CLN3-217ENST00000565354 RHBDL2Q9NX52 303 aa14□□□□□ -0.17
CLN3-217ENST00000565354 KIAA2026Q5HYC2 2103 aa14□□□□□ -0.17
CLN3-217ENST00000565354 FOXI3A8MTJ6 420 aaPredicted RBP13.99□□□□□ -0.17
CLN3-217ENST00000565354 ODF3BA8MYP8 253 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 C12orf77C9JDV5 145 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 HOXA3O43365 443 aaPredicted RBP13.99□□□□□ -0.17
CLN3-217ENST00000565354 HBZP02008 142 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 HIST1H1DP16402 221 aaKnown RBP13.99□□□□□ -0.17
CLN3-217ENST00000565354 GNB3P16520 340 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 GNG10P50151 68 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 ARFRP1Q13795 201 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 PLAC9Q5JTB6 97 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 Q6YL49 198 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 OR5H6Q8NGV6 325 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 OR9G1Q8NH87 305 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 DCSTAMPQ9H295 470 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 DPAGT1Q9H3H5 408 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 LINC00574Q9H8X3 128 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 MBNL3Q9NUK0 354 aaKnown RBP13.99□□□□□ -0.17
CLN3-217ENST00000565354 GNG12Q9UBI6 72 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 MGAT4AQ9UM21 535 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 SPATA2Q9UM82 520 aa13.99□□□□□ -0.17
CLN3-217ENST00000565354 IGHV3-43A0A0B4J1X8 118 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 C15orf65H3BRN8 121 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 RAB27BO00194 218 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 IGHV3-7P01780 117 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 MELTFP08582 738 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 IGHV3-43DP0DP04 118 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 HTR1DP28221 377 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 CD34P28906 385 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 TALDO1P37837 337 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 RORCP51449 518 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 CTF1Q16619 201 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 TMEM30BQ3MIR4 351 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 MINOS1Q5TGZ0 78 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 LHFPL4Q7Z7J7 247 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 ZNF554Q86TJ5 538 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 LDLRAD3Q86YD5 345 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 OR52M1Q8NGK5 317 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 OR1L1Q8NH94 360 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 RAB2BQ8WUD1 216 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 SSMEM1Q8WWF3 244 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 LEAP2Q969E1 77 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 CREB3L1Q96BA8 519 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 HDHD3Q9BSH5 251 aaPredicted RBP13.98□□□□□ -0.17
CLN3-217ENST00000565354 GFOD1Q9NXC2 390 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 ZNRD1Q9P1U0 126 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 AMMECR1Q9Y4X0 333 aaPredicted RBP13.98□□□□□ -0.17
CLN3-217ENST00000565354 MINOS1-NBL1R4GNA1 71 aa13.98□□□□□ -0.17
CLN3-217ENST00000565354 A0A087X0M5 115 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 A0A1B0GX30 115 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 SERPINE3A8MV23 424 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 NAPSAO96009 420 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 RNASE1P07998 156 aaKnown RBP13.97□□□□□ -0.17
CLN3-217ENST00000565354 CEACAM3P40198 252 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 CDNFQ49AH0 187 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 PLA1AQ53H76 456 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 OLFML2AQ68BL7 652 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 BEND2Q8NDZ0 799 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 C17orf50Q8WW18 174 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 GALMQ96C23 342 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms