RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 REG1BP48304 166 aa17.83■□□□□ 0.44
CLN3-215ENST00000565236 LOXL3P58215 753 aa17.83■□□□□ 0.44
CLN3-215ENST00000565236 SYT6Q5T7P8 510 aaPredicted RBP17.83■□□□□ 0.44
CLN3-215ENST00000565236 NKAIN3Q8N8D7 197 aa17.83■□□□□ 0.44
CLN3-215ENST00000565236 C5orf56Q8N8D9 126 aa17.83■□□□□ 0.44
CLN3-215ENST00000565236 MGMTP16455 207 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 IL3RAP26951 378 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 C6orf183Q5T699 404 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 OR4K15Q8NH41 348 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 TFAP2CQ92754 450 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 FKBP14Q9NWM8 211 aa17.82■□□□□ 0.44
CLN3-215ENST00000565236 IGHV3-72A0A0B4J1Y9 119 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 FAM90A10PA6NDY2 464 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 FAM90A7PA6NKC0 464 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 FAM90A23PA8MXZ1 464 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 C12orf77C9JDV5 145 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 FUT3P21217 361 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 EBI3Q14213 229 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 Q3ZCU0 254 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 FAM53AQ6NSI3 398 aaPredicted RBP17.81■□□□□ 0.44
CLN3-215ENST00000565236 ZNF329Q86UD4 541 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 LYPD6Q86Y78 171 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 TMEM104Q8NE00 496 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 CHPT1Q8WUD6 406 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 PHF21AQ96BD5 680 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 UQCC2Q9BRT2 126 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 NECAP2Q9NVZ3 263 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 GNG12Q9UBI6 72 aa17.81■□□□□ 0.44
CLN3-215ENST00000565236 NCBP2LA6PVI3 153 aaKnown RBP17.8■□□□□ 0.44
CLN3-215ENST00000565236 SERPINE3A8MV23 424 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 ANKRD65E5RJM6 399 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 PTGES3LE9PB15 166 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 CA11O75493 328 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 GLAP06280 429 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 IGLL1P15814 213 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 VHLP40337 213 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 TMEM30BQ3MIR4 351 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 TRAT1Q6PIZ9 186 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 PRR18Q8N4B5 295 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 MS4A15Q8N5U1 240 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 OR2T10Q8NGZ9 312 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 EAF1Q96JC9 268 aaPredicted RBP17.8■□□□□ 0.44
CLN3-215ENST00000565236 Q96M66 194 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 MND1Q9BWT6 205 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 DCLRE1BQ9H816 532 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 GHRLQ9UBU3 117 aa17.8■□□□□ 0.44
CLN3-215ENST00000565236 UBE2QL1A1L167 161 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 HBZP02008 142 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 CDK1P06493 297 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 GABPB1Q06547 395 aaPredicted RBP17.79■□□□□ 0.44
CLN3-215ENST00000565236 GPR50Q13585 617 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 ACSM3Q53FZ2 586 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 RNLSQ5VYX0 342 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 SLC35E3Q7Z769 313 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 GAPTQ8N292 157 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 RTN4IP1Q8WWV3 396 aaPredicted RBP17.79■□□□□ 0.44
CLN3-215ENST00000565236 ST6GALNAC6Q969X2 333 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 FAM46BQ96A09 425 aa17.79■□□□□ 0.44
CLN3-215ENST00000565236 NOL4LQ96MY1 436 aaPredicted RBP17.79■□□□□ 0.44
CLN3-215ENST00000565236 H0YHG0 523 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 IGHG2P01859 326 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 RCC1P18754 421 aaPredicted RBP17.78■□□□□ 0.44
CLN3-215ENST00000565236 INSL4Q14641 139 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 C6orf141Q5SZD1 244 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 FOXB2Q5VYV0 432 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 UNQ9370/PRO34162Q6UXP9 181 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 Q6ZPA2 131 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 SLC25A48Q6ZT89 311 aaKnown RBP17.78■□□□□ 0.44
CLN3-215ENST00000565236 IZUMO1Q8IYV9 350 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 OR10V1Q8NGI7 309 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 OR1L1Q8NH94 360 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 CST11Q9H112 138 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 SCN3BQ9NY72 215 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 KCNIP1Q9NZI2 227 aa17.78■□□□□ 0.44
CLN3-215ENST00000565236 SLC31A2O15432 143 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 PDCD6O75340 191 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 SC5DO75845 299 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 CD1BP29016 333 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 SLC35A2P78381 396 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 SLC35B1P78383 322 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 SIGIRRQ6IA17 410 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 TGIF2LXQ8IUE1 241 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 FOXRED2Q8IWF2 684 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 MRAPQ8TCY5 172 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 TMED9Q9BVK6 235 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 TAF9BQ9HBM6 251 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 LINC00527Q9UJ94 153 aa17.77■□□□□ 0.44
CLN3-215ENST00000565236 TXNL1O43396 289 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 MPIG6BO95866 241 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 UBBP0CG47 229 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 ZNF134P52741 427 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 SPHARQ15513 63 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 CT45A1Q5HYN5 189 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 STEAP3Q658P3 488 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 GLT8D1Q68CQ7 371 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 Q8N6K4 173 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 ZNF439Q8NDP4 499 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 CT45A3Q8NHU0 189 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 OR2S2Q9NQN1 319 aa17.76■□□□□ 0.43
CLN3-215ENST00000565236 MOSP00540 346 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms