RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ANGPTL4Q9BY76 406 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SLC7A5P2Q9GIP4 190 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR51M1Q9H341 326 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 LIME1Q9H400 295 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RGCCQ9H4X1 137 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 AAMDCQ9H7C9 122 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 METTL7AQ9H8H3 244 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF286AQ9HBT8 521 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 WFDC1Q9HC57 220 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF160Q9HCG1 818 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SH2D2AQ9NP31 389 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RPS10P5Q9NQ39 176 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR2S2Q9NQN1 319 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SLC2A9Q9NRM0 540 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SDHAF3Q9NRP4 125 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C19orf12Q9NSK7 152 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF701Q9NV72 531 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 NECAP2Q9NVZ3 263 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 KLRF1Q9NZS2 232 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZMAT5Q9UDW3 170 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 AK3Q9UIJ7 227 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF391Q9UJN7 358 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 DKKL1Q9UK85 242 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 NOSIPQ9Y314 301 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 PTRH2Q9Y3E5 179 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 TMED3Q9Y3Q3 217 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 LSM5Q9Y4Y9 91 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 U3KQA8 63 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MED12LQ86YW9 2145 aa2.09□□□□□ -2.08
SPG11-223ENST00000560858 GTF3C1Q12789 2109 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 GON4LQ3T8J9 2241 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 RTTNQ86VV8 2226 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 CABIN1Q9Y6J0 2220 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 IGKV1-27A0A075B6S5 117 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 TRBV6-6A0A0A6YYG2 114 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 TRAV1-1A0A0B4J248 108 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 IGKV1-12A0A0C4DH73 117 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 hCG_1809904A0A1W2PP81 198 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PPE2 198 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PR64 198 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PRV1 198 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 IGSF23A1L1A6 192 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 OR5H15A6NDH6 313 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 GAGE12JA6NER3 117 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZNF716A6NP11 495 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZNF732B4DXR9 585 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 TRDCB7Z8K6 153 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 UMAD1C9J7I0 102 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 NPIPB11E5RHQ5 1161 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 BMPR1BO00238 502 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 AGPAT2O15120 278 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 BCAT2O15382 392 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 ST8SIA3O43173 380 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 XRCC2O43543 280 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SGCEO43556 437 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SPRY3O43610 288 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 GATCO43716 136 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 NME2P1O60361 137 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 EIF1BO60739 113 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 SS18L1O75177 396 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 NDUFS6O75380 124 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 TUSC2O75896 110 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 OR2J2O76002 312 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZFAND5O76080 213 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 DIRAS3O95661 229 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SCGB1D2O95969 90 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 PPYP01298 95 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 IGKV1D-12P01611 117 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 HSPB1P04792 205 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 S100A9P06702 114 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 FABP1P07148 127 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SNRNP70P08621 437 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 SRP19P09132 144 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 CST2P09228 141 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZNF728P0DKX0 622 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SLC25A6P12236 298 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 FCGR2AP12318 317 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 LIFP15018 202 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZNF14P17017 642 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 EN2P19622 333 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 KLK2P20151 261 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 GABRR1P24046 479 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 S100PP25815 95 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 UCP1P25874 307 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 EPHA8P29322 1005 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 SFTPDP35247 375 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 CAMLGP49069 296 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 RND2P52198 227 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 CRIP2P52943 208 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 CLDN17P56750 224 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 FOXL2P58012 376 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SNRPEP62304 92 aaKnown RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 BAXQ07812 192 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 ZNF616Q08AN1 781 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 FABP9Q0Z7S8 132 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 SNAI3Q3KNW1 292 aa2.08□□□□□ -2.08
SPG11-223ENST00000560858 TMEM176BQ3YBM2 270 aaPredicted RBP2.08□□□□□ -2.08
SPG11-223ENST00000560858 NMSQ5H8A3 153 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms