RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PRRC2CQ9Y520 2896 aaKnown RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 LNP1A1A4G5 178 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 UMODP07911 640 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 FGF8P55075 233 aaPredicted RBP9.74□□□□□ -0.85
CUX1-218ENST00000560541 PSG4Q00888 419 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 EWSR1Q01844 656 aaKnown RBP eCLIP9.74□□□□□ -0.856e-9■■■■■ 33.2
CUX1-218ENST00000560541 EIF3IQ13347 325 aaKnown RBP9.74□□□□□ -0.85
CUX1-218ENST00000560541 GNMTQ14749 295 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 TMEM217Q8N7C4 229 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 RNF2Q99496 336 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 AHCTF1Q8WYP5 2266 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 IGHV1-45A0A0A0MS14 117 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 SSSCA1O60232 199 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 CCNOP22674 350 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 EPHA8P29322 1005 aaPredicted RBP9.74□□□□□ -0.85
CUX1-218ENST00000560541 SSR4P51571 173 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 RAB1AP62820 205 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 ATP6V1FQ16864 119 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 C9orf135Q5VTT2 229 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 ABLIM2Q6H8Q1 611 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 SLC25A26Q70HW3 274 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 C10orf35Q96D05 121 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 TUBG2Q9NRH3 451 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 RNF150Q9ULK6 438 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 MRPS17Q9Y2R5 130 aaKnown RBP9.74□□□□□ -0.85
CUX1-218ENST00000560541 TRIOBPQ9H2D6 2365 aa9.74□□□□□ -0.85
CUX1-218ENST00000560541 CXCL13O43927 109 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 CST7O76096 145 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 PPYP01298 95 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 COX6A1P12074 109 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 CCL4P13236 92 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 TCN2P20062 427 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 FKBP2P26885 142 aaKnown RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 WNT5AP41221 380 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 MALLQ13021 153 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 CEACAM16Q2WEN9 425 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 SLC23A3Q6PIS1 610 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 LHFPL2Q6ZUX7 228 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 COMMD1Q8N668 190 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 OR14L1PQ8NHC6 308 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 MOB3AQ96BX8 217 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 RAB39BQ96DA2 213 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 FAM210BQ96KR6 192 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ANGPTL4Q9BY76 406 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ACTR3CQ9C0K3 210 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 SLC35B3Q9H1N7 401 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 TMEM38BQ9NVV0 291 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ZFP30Q9Y2G7 519 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 TMED3Q9Y3Q3 217 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 IGSF23A1L1A6 192 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 IL6RP08887 468 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 IDH3GP51553 393 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 ELLP55199 621 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 CXorf66Q5JRM2 361 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 GPR157Q5UAW9 335 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 GCNT2Q8N0V5 402 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ZNF611Q8N823 705 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 OR2G3Q8NGZ4 309 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 BOD1Q96IK1 185 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ZNF700Q9H0M5 742 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 C3orf85A0A1B0GTC6 90 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 C3orf80F5H4A9 247 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 H0YL77 283 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 PDCD6O75340 191 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 TRAPPC6AO75865 159 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 CCL2P13500 99 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 CD33P20138 364 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ATP6V0CP27449 155 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 RUNX1Q01196 453 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 PMS2P11Q13670 270 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 IL13RA2Q14627 380 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 HAGHQ16775 308 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 FAM180AQ6UWF9 173 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 Q6ZSR3 168 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 AAED1Q7RTV5 226 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 ERASQ7Z444 233 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 LHFPL4Q7Z7J7 247 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 RPS19BP1Q86WX3 136 aaKnown RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 OR2C3Q8N628 320 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 SUMF2Q8NBJ7 301 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 TMEM171Q8WVE6 324 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 NAT6Q93015 286 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 HS3ST6Q96QI5 342 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 SLC7A10Q9NS82 523 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 IL36RNQ9UBH0 155 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 SLC7A11Q9UPY5 501 aa9.73□□□□□ -0.85
CUX1-218ENST00000560541 UBE2J1Q9Y385 318 aaPredicted RBP9.73□□□□□ -0.85
CUX1-218ENST00000560541 MPPED1O15442 326 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 TNFSF12O43508 249 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 RFPL3SP0C7P2 107 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 CEACAM1P13688 526 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 LRTM2Q8N967 370 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 OR4D5Q8NGN0 318 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 HLA-CQ95604 372 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 PBDC1Q9BVG4 233 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 POLR3KQ9Y2Y1 108 aaPredicted RBP9.72□□□□□ -0.85
CUX1-218ENST00000560541 C22orf46C9J442 243 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 K7N7A8 449 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 HPRT1P00492 218 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 GNRHRP30968 328 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms