RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TOR1AO14656 332 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 SNRPBP14678 240 aaKnown RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 HIST1H1DP16402 221 aaKnown RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 GDNFP39905 211 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 IER3P46695 156 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 RPL5P46777 297 aaKnown RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 DYNLT3P51808 116 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 ARHGDIBP52566 201 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 TMEM50BP56557 158 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 LSM3P62310 102 aaKnown RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 MRPS15P82914 257 aaKnown RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 HLA-DRB5Q30154 266 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 KRTAP24-1Q3LI83 254 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 PLAC9Q5JTB6 97 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 IDNKQ5T6J7 187 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 ZNF880Q6PDB4 577 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 LGALS14Q8TCE9 139 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 SLC25A46Q96AG3 418 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 AJUBAQ96IF1 538 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 ARHGAP5-AS1Q96IT6 56 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 BCL7BQ9BQE9 202 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 PECRQ9BY49 303 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 ZNF286AQ9HBT8 521 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 CHMP1AQ9HD42 196 aaPredicted RBP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.55□□□□□ -0.72
NEDD8-208ENST00000560427 DPM3Q9P2X0 92 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 AK3Q9UIJ7 227 aa10.55□□□□□ -0.72
NEDD8-208ENST00000560427 TRAV39A0A0B4J263 110 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 RNF212BA8MTL3 300 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 LEUTXA8MZ59 168 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 OOSP1A8MZH6 123 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 SDCBPO00560 298 aaPredicted RBP10.54□□□□□ -0.72
NEDD8-208ENST00000560427 HBZP02008 142 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 RCC1P18754 421 aaPredicted RBP10.54□□□□□ -0.72
NEDD8-208ENST00000560427 NFYBP25208 207 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 RPS19P39019 145 aaKnown RBP10.54□□□□□ -0.72
NEDD8-208ENST00000560427 SERPINB10P48595 397 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 LOXL3P58215 753 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 NCS1P62166 190 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 HTD2P86397 168 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 PLA2G7Q13093 441 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 HMGN3Q15651 99 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 CTF1Q16619 201 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 LRRC75BQ2VPJ9 315 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 C16orf87Q6PH81 154 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 LIAT1Q6ZQX7 453 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 RFESDQ8TAC1 157 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 NDNFQ8TB73 568 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 GALMQ96C23 342 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 CMSS1Q9BQ75 279 aaKnown RBP10.54□□□□□ -0.72
NEDD8-208ENST00000560427 ATG5Q9H1Y0 275 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 MMP28Q9H239 520 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 TAF9BQ9HBM6 251 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 RHBDL2Q9NX52 303 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 GFOD1Q9NXC2 390 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 SCOCQ9UIL1 159 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 JPT1Q9UK76 154 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 VPREB3Q9UKI3 123 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 SPATA2Q9UM82 520 aa10.54□□□□□ -0.72
NEDD8-208ENST00000560427 BUB1B-PAK6H3BSN5 160 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 J3QR06 171 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 CD3GP09693 182 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 TGFBR1P36897 503 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 VBP1P61758 197 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 MOGAT2Q3SYC2 334 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 LY6G6FQ5SQ64 297 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 GPR107Q5VW38 600 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 STEAP3Q658P3 488 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 CCDC144NLQ6NUI1 221 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 BAIAP2L2Q6UXY1 529 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 LHFPL4Q7Z7J7 247 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 LINC00311Q8N616 119 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 RAB2BQ8WUD1 216 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 PHF21AQ96BD5 680 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 C19orf24Q9BVV8 132 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 GNG12Q9UBI6 72 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 KCNK7Q9Y2U2 307 aa10.53□□□□□ -0.72
NEDD8-208ENST00000560427 RGS11O94810 467 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 DIRAS3O95661 229 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 IGHV4-59P01825 116 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 GSTP1P09211 210 aaKnown RBP10.52□□□□□ -0.73
NEDD8-208ENST00000560427 PITPNAQ00169 270 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 MADCAM1Q13477 382 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 SSX2Q16385 188 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 LTC4SQ16873 150 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 C17orf50Q8WW18 174 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 ACOT12Q8WYK0 555 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 AP3S1Q92572 193 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 CMTM3Q96MX0 182 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 OCSTAMPQ9BR26 566 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 CHIAQ9BZP6 476 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 NAA50Q9GZZ1 169 aaKnown RBP10.52□□□□□ -0.73
NEDD8-208ENST00000560427 Q9N2K0 584 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 OR2S2Q9NQN1 319 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 PSG11Q9UQ72 335 aa10.52□□□□□ -0.73
NEDD8-208ENST00000560427 FAM172BPA6NC97 362 aa10.51□□□□□ -0.73
NEDD8-208ENST00000560427 LY6LH3BQJ8 138 aa10.51□□□□□ -0.73
NEDD8-208ENST00000560427 H3BUX3 64 aa10.51□□□□□ -0.73
NEDD8-208ENST00000560427 YPEL1O60688 119 aa10.51□□□□□ -0.73
NEDD8-208ENST00000560427 GNB3P16520 340 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms