RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ETV3LQ6ZN32 361 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 LINC00596Q86U02 117 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 PRR18Q8N4B5 295 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 OR10A7Q8NGE5 316 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 EAF1Q96JC9 268 aaPredicted RBP14.02□□□□□ -0.17
HDDC3-205ENST00000559898 Q96M66 194 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 C8orf4Q9NR00 106 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 AURKAIP1Q9NWT8 199 aaPredicted RBP14.02□□□□□ -0.17
HDDC3-205ENST00000559898 ETAA1Q9NY74 926 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 CKLFQ9UBR5 152 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 LSM2Q9Y333 95 aaKnown RBP14.02□□□□□ -0.17
HDDC3-205ENST00000559898 PEX16Q9Y5Y5 336 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 CCRL2O00421 344 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 CRTAPO75718 401 aaPredicted RBP14.01□□□□□ -0.17
HDDC3-205ENST00000559898 CDK1P06493 297 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 GZMHP20718 246 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 CT45A1Q5HYN5 189 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 KHDC1LQ5JSQ8 128 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 UNQ9370/PRO34162Q6UXP9 181 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 LRRTM1Q86UE6 522 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 LINC00311Q8N616 119 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 Q8N6K4 173 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 CT45A3Q8NHU0 189 aa14.01□□□□□ -0.17
HDDC3-205ENST00000559898 TSSC4Q9Y5U2 329 aaPredicted RBP14.01□□□□□ -0.17
HDDC3-205ENST00000559898 PSMB11A5LHX3 300 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 PTGES3LE9PB15 166 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 ORC5O43913 435 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 ZNF780AO75290 641 aaPredicted RBP14□□□□□ -0.17
HDDC3-205ENST00000559898 HBZP02008 142 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 RAB7AP51149 207 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 AQP4P55087 323 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 TAS2R43P59537 309 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 MED21Q13503 144 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 EBI3Q14213 229 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 SLC16A12Q6ZSM3 486 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 LCNL1Q6ZST4 164 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 OR8H3Q8N146 312 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 GAPTQ8N292 157 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 WFDC9Q8NEX5 89 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 RTN4IP1Q8WWV3 396 aaPredicted RBP14□□□□□ -0.17
HDDC3-205ENST00000559898 TMED9Q9BVK6 235 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 PLSCR3Q9NRY6 295 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 TRAPPC2LQ9UL33 140 aa14□□□□□ -0.17
HDDC3-205ENST00000559898 MCRIP1C9JLW8 97 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 H3BUI4 141 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 CD1AP06126 327 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 PF4V1P10720 104 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 CD33P20138 364 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 KRTAP10-11P60412 298 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 GABPB1Q06547 395 aaPredicted RBP13.99□□□□□ -0.17
HDDC3-205ENST00000559898 ACSM3Q53FZ2 586 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 C6orf141Q5SZD1 244 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 Q8N9W7 124 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 OR52L2PQ8NGH6 319 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 OR52M1Q8NGK5 317 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 MRPL30Q8TCC3 161 aaKnown RBP13.99□□□□□ -0.17
HDDC3-205ENST00000559898 DUX3Q96PT4 197 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 GFI1Q99684 422 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 SULT4A1Q9BR01 284 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 NICN1Q9BSH3 213 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 PCDHB16Q9NRJ7 776 aa13.99□□□□□ -0.17
HDDC3-205ENST00000559898 SC5DO75845 299 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 MPIG6BO95866 241 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 GAPDHP04406 335 aaKnown RBP13.98□□□□□ -0.17
HDDC3-205ENST00000559898 VSIG8P0DPA2 414 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 F2RL1P55085 397 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 GPR176Q14439 515 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 SLC25A48Q6ZT89 311 aaKnown RBP13.98□□□□□ -0.17
HDDC3-205ENST00000559898 OR4X2Q8NGF9 303 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 RITA1Q96K30 269 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 HSPB9Q9BQS6 159 aa13.98□□□□□ -0.17
HDDC3-205ENST00000559898 A0A0A6YYD4 124 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 SERPINE3A8MV23 424 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 M0QZK8 103 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 IGHG2P01859 326 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 FUT3P21217 361 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 UNC119Q13432 240 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 IRF3Q14653 427 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 NKAPLQ5M9Q1 402 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 ODF3L1Q8IXM7 274 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 IZUMO1Q8IYV9 350 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 MRAPQ8TCY5 172 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 TAF9BQ9HBM6 251 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 NECAP2Q9NVZ3 263 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 ERGIC3Q9Y282 383 aa13.97□□□□□ -0.17
HDDC3-205ENST00000559898 NCBP2LA6PVI3 153 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 FGF16O43320 207 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 PF4P02776 101 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 HTR2CP28335 458 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 PPP1CCP36873 323 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 RPL23AP62750 156 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 GPR50Q13585 617 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 RBM48Q5RL73 367 aaKnown RBP13.96□□□□□ -0.17
HDDC3-205ENST00000559898 C8orf86Q6ZUL3 223 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 C6orf201Q7Z4U5 140 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 SLC35E3Q7Z769 313 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 CDH26Q8IXH8 852 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 STPG2Q8N412 459 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 LINC00482Q8N8I6 264 aa13.96□□□□□ -0.17
HDDC3-205ENST00000559898 C8orf31Q8N9H6 132 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms