RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 LRP11Q86VZ4 500 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 LYPD6Q86Y78 171 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 KRTCAP2Q8N6L1 136 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 TMEM75Q8N9X5 138 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 OR8A1Q8NGG7 326 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 MUC7Q8TAX7 377 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 CASTOR1Q8WTX7 329 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 YIPF5Q969M3 257 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 CLDN23Q96B33 292 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 PPCDCQ96CD2 204 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 IGF2BP2-AS1Q96M15 143 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 RBP7Q96R05 134 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 DCUN1D5Q9BTE7 237 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ZNF426Q9BUY5 554 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ARL6Q9H0F7 186 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 NSRP1Q9H0G5 558 aaKnown RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 ALX4Q9H161 411 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 ZNF286AQ9HBT8 521 aa0.84□□□□□ -2.27
USP3-209ENST00000558925 ZNF443Q9Y2A4 671 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 V9GYY5 206 aaPredicted RBP0.84□□□□□ -2.27
USP3-209ENST00000558925 MYO15BQ96JP2 1530 aa0.84□□□□□ -2.28
USP3-209ENST00000558925 CRB1P82279 1406 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 DSCAMO60469 2012 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 DAPL1A0PJW8 107 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 LEUTXA8MZ59 168 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 C4orf51C9J302 202 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 FTCDNL1E5RQL4 147 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 F5H768 121 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 C15orf65H3BRN8 121 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 K7EQS6 105 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PHYHO14832 338 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 EEF1E1O43324 174 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 CYTH3O43739 400 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SH2D1AO60880 128 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 UGT2B11O75310 529 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ARL6IP5O75915 188 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 CPSF4O95639 269 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 GPR75O95800 540 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PDYNP01213 254 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 LTAP01374 205 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 IGHV3-53P01767 116 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 HLA-AP01891 365 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 OCMP0CE72 109 aaPredicted RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 COX5BP10606 129 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 MLNP12872 115 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 UGT2B7P16662 529 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ZNF22P17026 224 aaPredicted RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 ORM2P19652 201 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 F8A1P23610 371 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 GADD45AP24522 165 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 CRABP2P29373 138 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PPP1CCP36873 323 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 INPP1P49441 399 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 LINC00313P59037 77 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 GABARAPL2P60520 117 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ACTBP60709 375 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ACTG1P63261 375 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 GTF2BQ00403 316 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 BSPH1Q075Z2 132 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 TSPAN31Q12999 210 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 DHRS2Q13268 280 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 APOFQ13790 326 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ZNF141Q15928 474 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 DEFB134Q4QY38 66 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 CDKL4Q5MAI5 379 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SDHAF4Q5VUM1 108 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PLEKHG7Q6ZR37 379 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SCXQ7RTU7 201 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PAGE2Q7Z2X7 111 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 MTERF4Q7Z6M4 381 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 SPATA24Q86W54 205 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PLCZ1Q86YW0 608 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 MSRB3Q8IXL7 192 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 EIF4E3Q8N5X7 224 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 TMEM156Q8N614 296 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 FER1L6-AS1Q8NA97 138 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 STOML3Q8TAV4 291 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SPPL2BQ8TCT7 592 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 APOBEC3DQ96AK3 386 aaPredicted RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 PPWD1Q96BP3 646 aaKnown RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 CMBLQ96DG6 245 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SLC25A44Q96H78 314 aaPredicted RBP0.83□□□□□ -2.28
USP3-209ENST00000558925 MBOAT7Q96N66 472 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 OR52B2Q96RD2 323 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 TMEM208Q9BTX3 173 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 METTL9Q9H1A3 318 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 MS4A6AQ9H2W1 248 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ASF1BQ9NVP2 202 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PLEKHJ1Q9NW61 149 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 COMMD9Q9P000 198 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 SLC23A2Q9UGH3 650 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 ZNF391Q9UJN7 358 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 LINC00588Q9Y4M8 146 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 PHLDA3Q9Y5J5 127 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 TRAPPC1Q9Y5R8 145 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 MTCH2Q9Y6C9 303 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 NLRC5Q86WI3 1866 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 CLUHO75153 1309 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 RAD50Q92878 1312 aa0.83□□□□□ -2.28
USP3-209ENST00000558925 CHD5Q8TDI0 1954 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms