RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PEX16Q9Y5Y5 336 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 TRAV39A0A0B4J263 110 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 C12orf77C9JDV5 145 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 SPINT2O43291 252 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 RPS27AP62979 156 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 EBI3Q14213 229 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 FBLN7Q53RD9 439 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 Q6ZS46 218 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 CEACAM19Q7Z692 300 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 NDUFA11Q86Y39 141 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 ZNF439Q8NDP4 499 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 OR6M1Q8NGM8 313 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 OR10X1Q8NGY0 326 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 KCNG3Q8TAE7 436 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 LEAP2Q969E1 77 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 ST6GALNAC6Q969X2 333 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 TRAPPC2LQ9UL33 140 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 MOB4Q9Y3A3 225 aa12.8□□□□□ -0.36
CCDC88C-209ENST00000554872 TMEM14DPA8MWL7 114 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 CCRL2O00421 344 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 SDCBPO00560 298 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 HSD17B6O14756 317 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 FGF16O43320 207 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 TXNL1O43396 289 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 MRPS14O60783 128 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 ARL6IP5O75915 188 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 BPNT1O95861 308 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 OPN1MWP04001 364 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 OPN1MW2P0DN77 364 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 OPN1MW3P0DN78 364 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 VSIG8P0DPA2 414 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 CD24P25063 80 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 CHATP28329 748 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 RANBP1P43487 201 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 GNG10P50151 68 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 QRFPP83859 136 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 LY6G6FQ5SQ64 297 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 SYT6Q5T7P8 510 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 TMEM91Q6ZNR0 172 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 SLC25A48Q6ZT89 311 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 IZUMO1Q8IYV9 350 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 TMEM59Q9BXS4 323 aa12.79□□□□□ -0.36
CCDC88C-209ENST00000554872 ERICH4A6NGS2 130 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 WIPF1O43516 503 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 GAPDHP04406 335 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 HTR2CP28335 458 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 EMX1Q04741 257 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 LTC4SQ16873 150 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 OR2W3Q7Z3T1 314 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 DRAM1Q8N682 238 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 OR56B4Q8NH76 319 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 CCDC107Q8WV48 283 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 MGLLQ99685 303 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 ACOT13Q9NPJ3 140 aa12.78□□□□□ -0.36
CCDC88C-209ENST00000554872 IGHV1-3A0A0C4DH29 117 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 ADARB2-AS1A8MUL3 147 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 SLC17A2O00624 439 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 PEX14O75381 377 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 MPIG6BO95866 241 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 IGHV3-7P01780 117 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 HBZP02008 142 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 SNRNP70P08621 437 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 CD28P10747 220 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 IL3RAP26951 378 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 RPS25P62851 125 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 HTD2P86397 168 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 CD83Q01151 205 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 UNC119Q13432 240 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 DIAPH2-AS1Q14236 149 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 ABCA11PQ4W5N1 156 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 ZNF367Q7RTV3 350 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 OR4K15Q8NH41 348 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 MRPL30Q8TCC3 161 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 FAM46BQ96A09 425 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 JPT1Q9UK76 154 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 LRRC42Q9Y546 428 aa12.77□□□□□ -0.37
CCDC88C-209ENST00000554872 ATP6V1G2O95670 118 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 HSMCR30P0CW71 290 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 RCC1P18754 421 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 GALP22466 123 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 GABARAPL2P60520 117 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 TMEM95Q3KNT9 176 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 ARSJQ5FYB0 599 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 CD200R1LQ6Q8B3 271 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 FAM89BQ8N5H3 189 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 Q8N6K4 173 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 C5orf56Q8N8D9 126 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 RTN4IP1Q8WWV3 396 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 TMEM203Q969S6 136 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 CNBD2Q96M20 576 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 NEDD4LQ96PU5 975 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 GFI1Q99684 422 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 TAF9BQ9HBM6 251 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 GNG12Q9UBI6 72 aa12.76□□□□□ -0.37
CCDC88C-209ENST00000554872 TRBV6-6A0A0A6YYG2 114 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 NAPSAO96009 420 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 LPLP06858 475 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 TMEM11P17152 192 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 CD1BP29016 333 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 VHLP40337 213 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms