RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 A0A1W2PPQ1 181 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 NPIPB13A6NJU9 1138 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PATE3B3GLJ2 98 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 NPIPB4C9JG80 1138 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 M0R135 149 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TNFSF11O14788 317 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CCL4P13236 92 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 B4GALT1P15291 398 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TDGF1P3P51864 188 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TAS2R30P59541 319 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RPS18P62269 152 aaKnown RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ID3Q02535 119 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ARL6IP1Q15041 203 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 DNLZQ5SXM8 178 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF787Q6DD87 383 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RHBDD2Q6NTF9 364 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TMPRSS7Q7RTY8 843 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 VASH2Q86V25 355 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF695Q8IW36 515 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 GPR137CQ8N3F9 429 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PRR18Q8N4B5 295 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RPUSD4Q96CM3 377 aaKnown RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SPACA9Q96E40 222 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 BORCS8Q96FH0 119 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF799Q96GE5 643 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RASL10BQ96S79 203 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM208Q9BTX3 173 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CCL28Q9NRJ3 127 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 UBE2J1Q9Y385 318 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PPIAL4AQ9Y536 164 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 BOD1L1Q8NFC6 3051 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 COL5A1P20908 1838 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 KIAA1324LA8MWY0 1029 aaPredicted RBP4.15□□□□□ -1.74
LIMA1-214ENST00000552783 P04436 131 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 METTL15P1P0C7V9 234 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 SFTPCP11686 197 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 EGR1P18146 543 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 HOXA6P31267 233 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 ECI1P42126 302 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 MLF1P58340 268 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 FAM3BP58499 235 aaPredicted RBP4.15□□□□□ -1.74
LIMA1-214ENST00000552783 IGFBP7Q16270 282 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 BEND2Q8NDZ0 799 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 OR5T1Q8NG75 326 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 FGFBP3Q8TAT2 258 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 OIT3Q8WWZ8 545 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 ADGRG7Q96K78 797 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 MRGPRX4Q96LA9 322 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 METTL9Q9H1A3 318 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 Q9N2K0 584 aa4.15□□□□□ -1.74
LIMA1-214ENST00000552783 HSPA12AO43301 675 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CA11O75493 328 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CDS2O95674 445 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 IAPPP10997 89 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CEACAM1P13688 526 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 SELEP16581 610 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 GDF1P27539 372 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 RPL29P47914 159 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF133P52736 654 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 HERV-K104P61576 105 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 RPS16P62249 146 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 VAMP2P63027 116 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF774Q6NX45 483 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 C20orf204Q6ZNR8 217 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 RPS19BP1Q86WX3 136 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 ZDHHC23Q8IYP9 409 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 OR10J5Q8NHC4 309 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 PP6455Q8WZ26 134 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 SPTSSAQ969W0 71 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM56Q96MV1 263 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 NOL4LQ96MY1 436 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 DIRC2Q96SL1 478 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 ATP5SQ99766 215 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 SRD5A3Q9H8P0 318 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM242Q9NWH2 141 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CISD1Q9NZ45 108 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM56-RWDD3S4R434 201 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 DOCK10Q96BY6 2186 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 A0A096LPE4 126 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TRAV39A0A0B4J263 110 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 A0A0U1RQV5 110 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 A0A1W2PPZ6 126 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 SLC22A20A6NK97 555 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 MARCH11A6NNE9 402 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 B4E171 279 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CXCL13O43927 109 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TK1P04183 234 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CCL3P10147 92 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF16P17020 682 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 MSR1P21757 451 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 DTYMKP23919 212 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 CTSSP25774 331 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 OTX1P32242 354 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TSPAN7P41732 249 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 RPL23P62829 140 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 GRB2P62993 217 aaKnown RBP4.15□□□□□ -1.75
LIMA1-214ENST00000552783 H3F3AP84243 136 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TLE4Q04727 773 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 TESK1Q15569 626 aa4.15□□□□□ -1.75
LIMA1-214ENST00000552783 HLA-BQ31612 363 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms