RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TMEM133Q9H2Q1 129 aa9.97□□□□□ -0.81
DDX55-210ENST00000543016 ZMAT3Q9HA38 289 aaKnown RBP9.97□□□□□ -0.81
DDX55-210ENST00000543016 SCPEP1Q9HB40 452 aa9.97□□□□□ -0.81
DDX55-210ENST00000543016 TAF9BQ9HBM6 251 aa9.97□□□□□ -0.81
DDX55-210ENST00000543016 SIRT7Q9NRC8 400 aa9.97□□□□□ -0.81
DDX55-210ENST00000543016 IGHV1-69DA0A0B4J2H0 117 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 CENPVL3A0A0U1RRI6 287 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 TMEM235A6NFC5 223 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 TRDCB7Z8K6 153 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 CTDSP2O14595 271 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 CRLF1O75462 422 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 RGS11O94810 467 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 IGHV1-69P01742 117 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 HBZP02008 142 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 FCGR3AP08637 254 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 CTXN2P0C2S0 81 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 SRD5A1P18405 259 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 PRSS3P35030 304 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 SSTR5P35346 364 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 PRRX1P54821 245 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 TAS2R20P59543 309 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 MRPS10P82664 201 aaKnown RBP9.96□□□□□ -0.82
DDX55-210ENST00000543016 MIDNQ504T8 468 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 LY6G6FQ5SQ64 297 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 FOXB2Q5VYV0 432 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 OLFML2AQ68BL7 652 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 LINC00299Q6ZSB3 139 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 OR4A4PQ8NGN8 299 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 SETD6Q8TBK2 473 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 ZNF596Q8TC21 504 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 LHX4Q969G2 390 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 KIRREL1Q96J84 757 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 OCSTAMPQ9BR26 566 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 CLEC7AQ9BXN2 247 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 ZNF286AQ9HBT8 521 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 EXTL2Q9UBQ6 330 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 JPT1Q9UK76 154 aa9.96□□□□□ -0.82
DDX55-210ENST00000543016 TRAV40A0A0B4J280 105 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 INAFM1C9JVW0 142 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 RNASEK-C17orf49H0YIS7 233 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 HLA-DQB1P01920 261 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 FAM157CP0CG43 387 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 HOXB4P17483 251 aaPredicted RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 HLA-DRB3P79483 266 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 KLF17Q5JT82 389 aaPredicted RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 PRAMEF5Q5TYX0 476 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 PYHIN1Q6K0P9 492 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 CNIH2Q6PI25 160 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 Q71RC1 249 aaPredicted RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 BEND2Q8NDZ0 799 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 OR9G1Q8NH87 305 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 RFESDQ8TAC1 157 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 FAM216AQ8WUB2 273 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 DIRAS2Q96HU8 199 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 HDHD3Q9BSH5 251 aaPredicted RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 MIXL1Q9H2W2 232 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 GFOD1Q9NXC2 390 aa9.95□□□□□ -0.82
DDX55-210ENST00000543016 MRPS7Q9Y2R9 242 aaKnown RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 TBL2Q9Y4P3 447 aaKnown RBP9.95□□□□□ -0.82
DDX55-210ENST00000543016 CELSR1Q9NYQ6 3014 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 IGHV2-26A0A0B4J1V2 119 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 TRAV39A0A0B4J263 110 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 MEX3AA1L020 520 aaKnown RBP9.94□□□□□ -0.82
DDX55-210ENST00000543016 SDCBPO00560 298 aaPredicted RBP9.94□□□□□ -0.82
DDX55-210ENST00000543016 TOR1AO14656 332 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 ITGB1BP1O14713 200 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 FABP7O15540 132 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 YPEL1O60688 119 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 LPLP06858 475 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 ZBTB25P24278 435 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 PTBP1P26599 531 aaKnown RBP eCLIP9.94□□□□□ -0.82
DDX55-210ENST00000543016 TNFSF8P32971 234 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 LGALS4P56470 323 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 LOXL3P58215 753 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 MINOS1Q5TGZ0 78 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 ZNF626Q68DY1 528 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 HCP5Q6MZN7 132 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 ZNF782Q6ZMW2 699 aaPredicted RBP9.94□□□□□ -0.82
DDX55-210ENST00000543016 HOGA1Q86XE5 327 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 LAX1Q8IWV1 398 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 ABHD12Q8N2K0 398 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 PNKDQ8N490 385 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 LINC00311Q8N616 119 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 NUDCD2Q8WVJ2 157 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 YPEL2Q96QA6 119 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 MS4A7Q9GZW8 240 aaPredicted RBP9.94□□□□□ -0.82
DDX55-210ENST00000543016 GHITMQ9H3K2 345 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 OR2S2Q9NQN1 319 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 GNG12Q9UBI6 72 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 MINOS1-NBL1R4GNA1 71 aa9.94□□□□□ -0.82
DDX55-210ENST00000543016 FN1P02751 2386 aaKnown RBP9.93□□□□□ -0.82
DDX55-210ENST00000543016 ODF3BA8MYP8 253 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 NPFFO15130 113 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 CTDSPLO15194 276 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 SSX5O60225 188 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 MMP23AO75900 390 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 IGHV4-38-2P0DP08 117 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 EPHA1P21709 976 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 OMGP23515 440 aa9.93□□□□□ -0.82
DDX55-210ENST00000543016 COX7A1P24310 79 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms