RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NCK1P16333 377 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 MPZP25189 248 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 CD1BP29016 333 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 C21orf33P30042 268 aaPredicted RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 HTR1FP30939 366 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 NANOS2P60321 138 aaKnown RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF816Q0VGE8 651 aaPredicted RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 DGCR6Q14129 220 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 RBMS2Q15434 407 aaKnown RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 TATDN3Q17R31 274 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 LRRC36Q1X8D7 754 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 LCN1P1Q5VSP4 162 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 IL34Q6ZMJ4 242 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 TRPM8Q7Z2W7 1104 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 RDH10Q8IZV5 341 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 YIPF7Q8N8F6 280 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF565Q8N9K5 539 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 UBALD1Q8TB05 177 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 GNPDA2Q8TDQ7 276 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 C2CD4CQ8TF44 421 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 ANP32BQ92688 251 aaKnown RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 FAM162AQ96A26 154 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 BORCS8Q96FH0 119 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 FUZQ9BT04 418 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 GGTLC1Q9BX51 225 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 BARHL1Q9BZE3 327 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 PKIBQ9C010 78 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 OR51V1Q9H2C8 321 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 RANGRFQ9HD47 186 aaPredicted RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 AKIP1Q9NQ31 210 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 NKIRAS1Q9NYS0 192 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 CALYQ9NYX4 217 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 CD300AQ9UGN4 299 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 MRM2Q9UI43 246 aaKnown RBP3.58□□□□□ -1.84
LIMS1-214ENST00000542845 IGKV1-27A0A075B6S5 117 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 LOC102724200A0A096LPH7 203 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 IGHV7-81A0A0B4J1V7 117 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 IGHV3-43A0A0B4J1X8 118 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 C13orf42A0A1B0GVH6 325 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 PTGES3LE9PB15 166 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 MRASO14807 208 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 DEGS1O15121 323 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 ENTPD6O75354 484 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 NXPH3O95157 252 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CLEC3BP05452 202 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CSN3P07498 182 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 IGHV3-43DP0DP04 118 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 ATP6V1B1P15313 513 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 ZP3P21754 424 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CD40LGP29965 261 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 BMI1P35226 326 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 BLVRAP53004 296 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 DEFA5Q01523 94 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 KLF5Q13887 457 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 PLGLAQ15195 96 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 DEFB135Q30KP9 77 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 SAMD4BQ5PRF9 694 aaKnown RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 LINC01590Q5TEZ4 76 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 UNQ5815/PRO19632Q6UWF5 114 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 Q8N1X5 172 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM217Q8N7C4 229 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 MINDY2Q8NBR6 621 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 OR8J3Q8NGG0 315 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 OR8H1Q8NGG4 311 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 OR13A1Q8NGR1 328 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 OTOSQ8NHW6 89 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 MRGPRDQ8TDS7 321 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 DYNLRB2Q8TF09 96 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 RTN4IP1Q8WWV3 396 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM106AQ96A25 262 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 RCN3Q96D15 328 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 COQ2Q96H96 371 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 RITA1Q96K30 269 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 SPACA5Q96QH8 159 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 NR1H4Q96RI1 486 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CLCC1Q96S66 551 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 MBOAT4Q96T53 435 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF251Q9BRH9 671 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 FAM103A1Q9BTL3 118 aaKnown RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 TSSK6Q9BXA6 273 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 OSBPL10Q9BXB5 764 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 ANKRD60Q9BZ19 345 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 NMNAT2Q9BZQ4 307 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CTDSP1Q9GZU7 261 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 FAM206AQ9NX38 181 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 CNOT2Q9NZN8 540 aaKnown RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 KIF25Q9UIL4 384 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 LAMP5Q9UJQ1 280 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 FOXA2Q9Y261 457 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-214ENST00000542845 KLHDC2Q9Y2U9 406 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 V9GYQ6 96 aa3.57□□□□□ -1.84
LIMS1-214ENST00000542845 DNAH6Q9C0G6 4158 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 RIIAD1A6NNX1 92 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 C16orf90A8MZG2 172 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ARPC1BO15143 372 aaKnown RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 MAGEB3O15480 346 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 MAGEB4O15481 346 aaPredicted RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 SOX14O95416 240 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 IFNGP01579 166 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TTRP02766 147 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms