RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 RNFT1Q5M7Z0 435 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 OR5AS1Q8N127 324 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 OR5A2Q8NGI9 324 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 NT5CQ8TCD5 201 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 FGF14Q92915 247 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 HCFC2Q9Y5Z7 792 aa10.7□□□□□ -0.7
USP3-203ENST00000538686 C3orf85A0A1B0GTC6 90 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 PDE6DO43924 150 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 GNG7O60262 68 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 ZNF324O75467 553 aaPredicted RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 EFEMP2O95967 443 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 TMEM267Q0VDI3 215 aaPredicted RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 FAM53BQ14153 422 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 BVES-AS1Q5T3Y7 98 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 ASCL4Q6XD76 172 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 TCF23Q7RTU1 214 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 FAM58AQ8N1B3 248 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 OR1B1Q8NGR6 318 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 OR1N2Q8NGR9 330 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 SLC25A40Q8TBP6 338 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 RNF133Q8WVZ7 376 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 KLHDC7BQ96G42 594 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 SFRP2Q96HF1 295 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 RAB40CQ96S21 281 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 SIGMAR1Q99720 223 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 PBOV1Q9GZY1 135 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 LYRM4Q9HD34 91 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 DAPP1Q9UN19 280 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 SCN3AQ9NY46 2000 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 GAGE10A6NGK3 116 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 METTL12A8MUP2 240 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 DEGS1O15121 323 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 GPR75O95800 540 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 EN2P19622 333 aaPredicted RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 GUCA1AP43080 201 aaPredicted RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 RPS15AP62244 130 aaKnown RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 LRRC75BQ2VPJ9 315 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 HLA-BQ31612 363 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 MRPL54Q6P161 138 aaKnown RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 C5orf17Q8NAS9 161 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 SUMF1Q8NBK3 374 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 NRTNQ99748 197 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 RBM24Q9BX46 236 aaKnown RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 GNB1LQ9BYB4 327 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 WDR61Q9GZS3 305 aaKnown RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 ST20Q9HBF5 79 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 NXT1Q9UKK6 140 aaKnown RBP10.69□□□□□ -0.7
USP3-203ENST00000538686 Q9Y3F1 56 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 RNF114Q9Y508 228 aa10.69□□□□□ -0.7
USP3-203ENST00000538686 DOCK8Q8NF50 2099 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 DOCK9Q9BZ29 2069 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 IGKV1D-8A0A087WSZ0 117 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 CTXND1A0A1B0GTU2 59 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 H0YJW9 148 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 CHST1O43916 411 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 IGHMP01871 453 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 CTLA4P16410 223 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 GDF1P27539 372 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 DUSP3P51452 185 aaPredicted RBP10.68□□□□□ -0.7
USP3-203ENST00000538686 HBG1P69891 147 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 HBG2P69892 147 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 EGR4Q05215 589 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 MGAT2Q10469 447 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 TSPO2Q5TGU0 170 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 NEGR1Q7Z3B1 354 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 FAM222BQ8WU58 562 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 NINJ1Q92982 152 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 SARAFQ96BY9 339 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 OR2V2Q96R30 315 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 STRADBQ9C0K7 418 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 TXNIPQ9H3M7 391 aa10.68□□□□□ -0.7
USP3-203ENST00000538686 PPIAL4EA0A075B759 164 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 PPIAL4CA0A0B4J2A2 164 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 A0A1W2PP11 408 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 PPIAL4DF5H284 164 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 FCN1O00602 326 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 MPPED1O15442 326 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 MT-ATP6P00846 226 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 IGKV1D-16P01601 117 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 PPIAL4FP0DN26 164 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 VDAC1P21796 283 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 CBLN1P23435 193 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 HERV-K104P61576 105 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 CXorf66Q5JRM2 361 aaPredicted RBP10.67□□□□□ -0.7
USP3-203ENST00000538686 CLLU1OSQ5K130 101 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 PLPP4Q5VZY2 271 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 FAM57BQ71RH2 274 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 SSC4DQ8WTU2 575 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 WNT10AQ9GZT5 417 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 VSIRQ9H7M9 311 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 UBE2ZQ9H832 354 aaPredicted RBP10.67□□□□□ -0.7
USP3-203ENST00000538686 PLEKHJ1Q9NW61 149 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 MCTS1Q9ULC4 181 aaKnown RBP10.67□□□□□ -0.7
USP3-203ENST00000538686 MMP17Q9ULZ9 603 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 WASHC3Q9Y3C0 194 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 CACNA1CQ13936 2221 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 A0A1W2PS18 150 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 SHISA7A6NL88 538 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 ADAM20O43506 726 aa10.67□□□□□ -0.7
USP3-203ENST00000538686 TNFP01375 233 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms