RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 HTTP42858 3142 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 A0A1B0GU03 582 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 GCGP01275 180 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 APCSP02743 223 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 ACAA1P09110 424 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 IGFBP6P24592 240 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 C19orf57Q0VDD7 668 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 KHDC3LQ587J8 217 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 ZNF880Q6PDB4 577 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 TEPPQ6URK8 271 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 CBLN3Q6UW01 205 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 SLC25A40Q8TBP6 338 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 VSTM2LQ96N03 204 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 ASCL3Q9NQ33 180 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 RPLP1P05386 114 aaKnown RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 HIST1H1BP16401 226 aaKnown RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 IER3P46695 156 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 RHBDD2Q6NTF9 364 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 BHLHA15Q7RTS1 189 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 MAFAQ8NHW3 353 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-209ENST00000537178 FAM222BQ8WU58 562 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 TRPM7Q96QT4 1865 aa9.35□□□□□ -0.91
CLIP1-209ENST00000537178 IGKV3-7A0A075B6H7 116 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 EPHA8P29322 1005 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 RTP5Q14D33 572 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CCDC144NLQ6NUI1 221 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 SLC25A42Q86VD7 318 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 ASB10Q8WXI3 467 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CCL28Q9NRJ3 127 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 ALPK3Q96L96 1907 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 A0A1W2PQD3 144 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 J3KRW8 73 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CDIPTO14735 213 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 SEC11BP0C7V7 166 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 TMEM255AQ5JRV8 349 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 LINC01555Q8NAE3 123 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 MRPL30Q8TCC3 161 aaKnown RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 RAB33BQ9H082 229 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CRISPLD2Q9H0B8 497 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 LEUTXA8MZ59 168 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CDX4O14627 284 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 MPZL1O95297 269 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 ZNF25P17030 456 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CLDN18P56856 261 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 EWSR1Q01844 656 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 AMMECR1LQ6DCA0 310 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 NFAM1Q8NET5 270 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 RND1Q92730 232 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 OPN4Q9UHM6 478 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 OR2W1Q9Y3N9 320 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 ZNF106Q9H2Y7 1883 aaKnown RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 H3BQ15 152 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 SOCS1O15524 211 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 C19orf54Q5BKX5 351 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 PRSS41Q7RTY9 318 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 ZNF764Q96H86 408 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 LRRC3BQ96PB8 259 aa9.34□□□□□ -0.91
CLIP1-209ENST00000537178 TRAF4Q9BUZ4 470 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-209ENST00000537178 CDC42EP2O14613 210 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 DAOP14920 347 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 HOXA6P31267 233 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 PPP1CCP36873 323 aaKnown RBP9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SELENOPP49908 381 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 VN1R4Q7Z5H5 301 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 MOGAT3Q86VF5 341 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 AMER3Q8N944 861 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 FBLIM1Q8WUP2 373 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 MRPL24Q96A35 216 aaKnown RBP9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ST6GAL2Q96JF0 529 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 TBX15Q96SF7 602 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 PARP11Q9NR21 331 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 TMEM38BQ9NVV0 291 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 TINAGQ9UJW2 476 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 GEMIN2O14893 280 aaKnown RBP9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SYNGR1O43759 233 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 PEX11BO96011 259 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 CTGFP29279 349 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SLC23A3Q6PIS1 610 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 DEFB124Q8NES8 71 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 OR2Y1Q8NGV0 311 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 RAB37Q96AX2 223 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SMDT1Q9H4I9 107 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 LIPT2A6NK58 231 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 NPIPB6E9PJ23 425 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 LINC01565O15544 149 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 PKIAP61925 76 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SPEM2Q0P670 501 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ZNF841Q6ZN19 808 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 LDLRAD3Q86YD5 345 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 CBLN2Q8IUK8 224 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 GBGT1Q8N5D6 347 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 LINC00052Q96N35 136 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 A8MWL6 223 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ZNF324O75467 553 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ZNF250P15622 560 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 SOX8P57073 446 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ISXQ2M1V0 245 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 OR10AC1Q8NH08 325 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 ZNF502Q8TBZ5 544 aa9.33□□□□□ -0.92
CLIP1-209ENST00000537178 MRGPRFQ96AM1 343 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms