RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 MMP28Q9H239 520 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 VCXQ9H320 206 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 GAL3ST2Q9H3Q3 398 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 RNF167Q9H6Y7 350 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 MBNL3Q9NUK0 354 aaKnown RBP4.03□□□□□ -1.76
USH1C-210ENST00000534556 GFOD1Q9NXC2 390 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 SCN3BQ9NY72 215 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 OR6C3Q9NZP0 311 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 ELF5Q9UKW6 265 aaPredicted RBP4.03□□□□□ -1.76
USH1C-210ENST00000534556 RAB26Q9ULW5 256 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 KCNK7Q9Y2U2 307 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 TPRKBQ9Y3C4 175 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 PEX16Q9Y5Y5 336 aa4.03□□□□□ -1.76
USH1C-210ENST00000534556 IGKV1-6A0A0C4DH72 117 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 TMEM272A0A1B0GTI8 110 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 A0A1B0GUS0 222 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 TMEM30CPA0ZSE6 113 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 FUOMA2VDF0 154 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 LEUTXA8MZ59 168 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 AIPO00170 330 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 SLC17A2O00624 439 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 ORC5O43913 435 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 PDCD6O75340 191 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 NAPSAO96009 420 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 SNRNP70P08621 437 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 VSIG10L2P0DP72 767 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 SLC2A2P11168 524 aaPredicted RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 FUT3P21217 361 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 CALRP27797 417 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 GABRA5P31644 462 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 TGFBR1P36897 503 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 REG1BP48304 166 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 KCNJ3P48549 501 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 LINC00205P59089 165 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 EBI3Q14213 229 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 RBM39Q14498 530 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 HNF4GQ14541 408 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 C2orf76Q3KRA6 126 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 PLAC9Q5JTB6 97 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 HES5Q5TA89 166 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 UBE2UQ5VVX9 321 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 OR52W1Q6IF63 320 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 C18orf65Q6ZTR6 163 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 LINC00596Q86U02 117 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 FAM89BQ8N5H3 189 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 LINC00311Q8N616 119 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 Q8N6K4 173 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 NKAIN3Q8N8D7 197 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 ZNF565Q8N9K5 539 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 OR51D1Q8NGF3 324 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 OR10V1Q8NGI7 309 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 OR56B4Q8NH76 319 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 OR9G1Q8NH87 305 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 UFD1Q92890 307 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 MRPS24Q96EL2 167 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 RBM14Q96PK6 669 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 SLC25A33Q9BSK2 321 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 BARHL1Q9BZE3 327 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 RANBP3Q9H6Z4 567 aaPredicted RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 TAF9BQ9HBM6 251 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 TCF7L1Q9HCS4 588 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 PLSCR3Q9NRY6 295 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 NDUFB11Q9NX14 153 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 ETAA1Q9NY74 926 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 CKLFQ9UBR5 152 aa4.02□□□□□ -1.77
USH1C-210ENST00000534556 RRP15Q9Y3B9 282 aaKnown RBP4.02□□□□□ -1.77
USH1C-210ENST00000534556 DNAH7Q8WXX0 4024 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 IGKV1D-8A0A087WSZ0 117 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 IGHV1-3A0A0C4DH29 117 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 FAM90A10PA6NDY2 464 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 BTBD17A6NE02 478 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 FAM90A7PA6NKC0 464 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 FAM90A23PA8MXZ1 464 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 MCRIP1C9JLW8 97 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 SDCBPO00560 298 aaPredicted RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 TOR1AO14656 332 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 ZNF780AO75290 641 aaPredicted RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 BPNT1O95861 308 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 LPLP06858 475 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 CLEC2LP0C7M8 214 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 GZMHP20718 246 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 CNTFRP26992 372 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 MAPK3P27361 379 aaPredicted RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 BLVRBP30043 206 aaPredicted RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 PPP1CCP36873 323 aaKnown RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 OR3A3P47888 321 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 HSPA13P48723 471 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 VEGFCP49767 419 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 ZNF137PP52743 207 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 PRRX1P54821 245 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 F2RL1P55085 397 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 GABARAPL2P60520 117 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 ZNF816Q0VGE8 651 aaPredicted RBP4.01□□□□□ -1.77
USH1C-210ENST00000534556 GPR176Q14439 515 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 HERPUD1Q15011 391 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 HMGN3Q15651 99 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 ABCA11PQ4W5N1 156 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 MORN2Q502X0 79 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 C22orf42Q6IC83 251 aa4.01□□□□□ -1.77
USH1C-210ENST00000534556 C11orf88Q6PI97 169 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms