RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZNF383Q8NA42 475 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 OR5P3Q8WZ94 311 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 ATP5SQ99766 215 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 TRAV24A0A0B4J272 114 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 HS3ST1O14792 307 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 ICAM4Q14773 271 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 RNPS1Q15287 305 aaKnown RBP16.41■□□□□ 0.22
VPS28-213ENST00000530983 ZNF324BQ6AW86 544 aaPredicted RBP16.41■□□□□ 0.22
VPS28-213ENST00000530983 RDH5Q92781 318 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 RIMS4Q9H426 269 aaPredicted RBP16.41■□□□□ 0.22
VPS28-213ENST00000530983 DNAJC13O75165 2243 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 TRBV6-6A0A0A6YYG2 114 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 RAB39BQ96DA2 213 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 MUCL1Q96DR8 90 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 DOCK7Q96N67 2140 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 HIST1H2AAQ96QV6 131 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 PLK3Q9H4B4 646 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 UNKLQ9H9P5 680 aaKnown RBP16.4■□□□□ 0.22
VPS28-213ENST00000530983 OR2W1Q9Y3N9 320 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 MMP24Q9Y5R2 645 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 KIAA1324LA8MWY0 1029 aaPredicted RBP16.4■□□□□ 0.22
VPS28-213ENST00000530983 SCAF4O95104 1147 aaKnown RBP16.4■□□□□ 0.22
VPS28-213ENST00000530983 NDUFA6P56556 154 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 ZXDAP98168 799 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 DEFA6Q01524 100 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 IL24Q13007 206 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 OR8G1Q15617 311 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 AKR1C8PQ5T2L2 129 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 LINC00596Q86U02 117 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 C17orf78Q8N4C9 275 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 TMEM105Q8N8V8 129 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 OR51H1Q8NH63 302 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 GPR146Q96CH1 333 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 HIPK2Q9H2X6 1198 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 SMOC1Q9H4F8 434 aa16.4■□□□□ 0.22
VPS28-213ENST00000530983 FAM166BA8MTA8 275 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 H0YL77 283 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 H3BP45 60 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 MAGEA5P43359 124 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 CEBPGP53567 150 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 TAS2R30P59541 319 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 ZNF506Q5JVG8 444 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 ZNF880Q6PDB4 577 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 H1FOOQ8IZA3 346 aaPredicted RBP16.39■□□□□ 0.21
VPS28-213ENST00000530983 CYB561D1Q8N8Q1 229 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 OR10J5Q8NHC4 309 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 OPA3Q9H6K4 179 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 DOK5Q9P104 306 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 ARHGAP21Q5T5U3 1957 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 FRYQ5TBA9 3013 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 SYNGR4O95473 234 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 PSG2P11465 335 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 ACP1P24666 158 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 DBX2Q6ZNG2 339 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 CLDND2Q8NHS1 167 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 APH1AQ96BI3 265 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 B4GALT7Q9UBV7 327 aa16.39■□□□□ 0.21
VPS28-213ENST00000530983 ERRFI1Q9UJM3 462 aaPredicted RBP16.39■□□□□ 0.21
VPS28-213ENST00000530983 ZNF727A8MUV8 499 aa16.38■□□□□ 0.21
VPS28-213ENST00000530983 HSPB1P04792 205 aaKnown RBP16.38■□□□□ 0.21
VPS28-213ENST00000530983 ARR3P36575 388 aa16.38■□□□□ 0.21
VPS28-213ENST00000530983 HLA-DRB3P79483 266 aa16.38■□□□□ 0.21
VPS28-213ENST00000530983 IZUMO4Q1ZYL8 232 aa16.38■□□□□ 0.21
VPS28-213ENST00000530983 GAR1Q9NY12 217 aaKnown RBP16.38■□□□□ 0.21
VPS28-213ENST00000530983 FOSL1P15407 271 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 S100A2P29034 98 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 WNT5AP41221 380 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 TLE4Q04727 773 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 STX12Q86Y82 276 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 FAM58AQ8N1B3 248 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 CABLES2Q9BTV7 478 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 TTTY12Q9BZ98 90 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 DLL3Q9NYJ7 618 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 WSB1Q9Y6I7 421 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 A0A1B0GU03 582 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 ARGFXA6NJG6 315 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 SERPINE2P07093 398 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 DPPA3Q6W0C5 159 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 Q6ZRM9 215 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 ZNF429Q86V71 674 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 RBMXL1Q96E39 390 aaKnown RBP16.37■□□□□ 0.21
VPS28-213ENST00000530983 RHOVQ96L33 236 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 PRDM13Q9H4Q3 707 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 AHCTF1Q8WYP5 2266 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 MED12LQ86YW9 2145 aa16.37■□□□□ 0.21
VPS28-213ENST00000530983 ANKRD30BLA7E2S9 258 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 RHBDL1O75783 438 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 IGLV2-14P01704 120 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 SLC25A6P12236 298 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 S100GP29377 79 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 TAGLN2P37802 199 aaKnown RBP16.36■□□□□ 0.21
VPS28-213ENST00000530983 UBE2KP61086 200 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 GNG3P63215 75 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 DLK1P80370 383 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 TMEM267Q0VDI3 215 aaPredicted RBP16.36■□□□□ 0.21
VPS28-213ENST00000530983 ZNF573Q86YE8 665 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 OR1A1Q9P1Q5 309 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 A0A087WWC5 75 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 DFFBO76075 338 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 IGKV1-39P01597 117 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms