RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FLRT3Q9NZU0 649 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 PXMP4Q9Y6I8 212 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 FAM53AQ6NSI3 398 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 OR10AC1Q8NH08 325 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 FGF13Q92913 245 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 LINC01549A6NIU2 74 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 A8MXK9 166 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 RPL36A-HNRNPH2H7BZ11 118 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 TMEM78Q5T7P6 136 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 Q6AWC8 147 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 MMD2Q8IY49 270 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 TMEM190Q8WZ59 177 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 SF3B5Q9BWJ5 86 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 MRPL32Q9BYC8 188 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 HES7Q9BYE0 225 aa9.86□□□□□ -0.83
LIMCH1-217ENST00000512946 J3QT63 122 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RAC3P60763 192 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RPS4XP62701 263 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 FAM71F2Q6NXP2 309 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 ASCL5Q7RTU5 278 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 APCDD1LQ8NCL9 501 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TAF15Q92804 592 aaKnown RBP eCLIP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TCFL5Q9UL49 500 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 ARHGEF28Q8N1W1 1705 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 A0A096LPE4 126 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TRAV8-2A0A0B4J237 113 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 A0A1W2PPZ6 126 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 M0R1B8 84 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 OR2A4O95047 310 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 MPLP40238 635 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RND3P61587 244 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RTN4RL1Q86UN2 441 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 MSRB3Q8IXL7 192 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 OR2A7Q96R45 310 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 KIR2DL4Q99706 377 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 SLC25A2Q9BXI2 301 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 PDFQ9HBH1 243 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 DNAJB12Q9NXW2 375 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TINAGQ9UJW2 476 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 PPIL1Q9Y3C6 166 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 ASPDHA6ND91 283 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 SYNGR1O43759 233 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 HBBP68871 147 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TNXAQ16473 311 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 C2orf83Q53S99 150 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 WDYHV1Q96HA8 205 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 ANKRD26Q9UPS8 1709 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 TRAV38-1A0A0B4J264 116 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 F12P00748 615 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RFLNAQ6ZTI6 216 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 C10orf111Q8N326 155 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 SLC25A40Q8TBP6 338 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 RGP1Q92546 391 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 GPR132Q9UNW8 380 aa9.85□□□□□ -0.83
LIMCH1-217ENST00000512946 DNAJC25-GNG10A0A024R161 153 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 LINC00587B1AMM8 73 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 EML2O95834 649 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 CAPZBP47756 277 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 OR2Z1Q8NG97 314 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 ZDHHC16Q969W1 377 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 SDHCQ99643 169 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 CCL28Q9NRJ3 127 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 GLRX2Q9NS18 164 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 LOC389332A0A1B0GUA5 103 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 LILRA5A6NI73 299 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 MNX1P50219 401 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 KIAA0040Q15053 153 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 TCTN1Q2MV58 587 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 SNAI3Q3KNW1 292 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 MESTQ5EB52 335 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 OR4D9Q8NGE8 314 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 PGLYRP3Q96LB9 341 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 HKR1P10072 659 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 PXNP49023 591 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 RHBDD2Q6NTF9 364 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 CYP2G1PQ6ZSU1 146 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 OR8B2Q96RD0 313 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 LINC00470Q9BZP3 86 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 TNFRSF12AQ9NP84 129 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 CLEC5AQ9NY25 188 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 GJB3O75712 270 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 TMEM50AO95807 157 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 PSG9Q00887 426 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 TMEM249Q2WGJ8 235 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 MRGPRFQ96AM1 343 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 ASCL3Q9NQ33 180 aa9.84□□□□□ -0.83
LIMCH1-217ENST00000512946 MEIG1Q5JSS6 88 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 S100A7L2Q5SY68 101 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ZNF441Q8N8Z8 693 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 OR4D5Q8NGN0 318 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 OR2K2Q8NGT1 345 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 TRMT61AQ96FX7 289 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ABHD14AQ9BUJ0 271 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ELOVL5Q9NYP7 299 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 NPTNQ9Y639 398 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 A0A1W2PQD3 144 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 H0YL77 283 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 J3QR06 171 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 PLPP3O14495 311 aa9.83□□□□□ -0.84
LIMCH1-217ENST00000512946 ETHE1O95571 254 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms