RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PAM16Q9Y3D7 125 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 NLRC5Q86WI3 1866 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 RPLP1P05386 114 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 TAS2R60P59551 318 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 ROM1Q03395 351 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 IL24Q13007 206 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 TECTBQ96PL2 329 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 RAB40CQ96S21 281 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 IGKV3D-11A0A0A0MRZ8 115 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 KHDC3LQ587J8 217 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 PLAC9Q5JTB6 97 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 PRAMEF5Q5TYX0 476 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 PRAMEF6Q5VXH4 476 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 RIMS4Q9H426 269 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 DOCK9Q9BZ29 2069 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 A0A1B0GTI1 187 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 SPRY3O43610 288 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF708P17019 499 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 RND3P61587 244 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 GFI1Q99684 422 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 OR2H1Q9GZK4 316 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 ERRFI1Q9UJM3 462 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 FOXO1Q12778 655 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 OR2Z1Q8NG97 314 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 CMTM2Q8TAZ6 248 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 C22orf15Q8WYQ4 148 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 CTDSP1Q9GZU7 261 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 CACNG5Q9UF02 275 aa14.18□□□□□ -0.14
CCDC88B-209ENST00000494080 FREM3P0C091 2139 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 LRRC30A6NM36 301 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 COLCA2A8K830 154 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 UBE2CO00762 179 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 SPINK4O60575 86 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 SLC25A6P12236 298 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 HIKESHIQ53FT3 197 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 ANGPTL4Q9BY76 406 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 DUXBA0A1W2PPF3 345 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 DANCRP0C864 163 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 DTYMKP23919 212 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 RPS23P62266 143 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 LBHQ53QV2 105 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 DPPA3Q6W0C5 159 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 ATP5SQ99766 215 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 DDA1Q9BW61 102 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 HIPK2Q9H2X6 1198 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 MTCH1Q9NZJ7 389 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 VAX2Q9UIW0 290 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 NOTCH3Q9UM47 2321 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 TRGV8A0A0C4DH27 118 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 MST1P26927 711 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 PCOLCEQ15113 449 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF519Q8TB69 540 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 SMIM8Q96KF7 97 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 MYLKQ15746 1914 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 CREBBPQ92793 2442 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 C5orf52A6NGY3 159 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 M0QZK8 103 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 GGCTO75223 188 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 KRASP01116 189 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 TBC1D26Q86UD7 250 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 ZDHHC8Q9ULC8 765 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 RPH3ALQ9UNE2 315 aa14.17□□□□□ -0.14
CCDC88B-209ENST00000494080 FGF16O43320 207 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 RAMP1O60894 148 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 OR8U8P0C7N1 319 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 SLC38A11Q08AI6 406 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 ESPL1Q14674 2120 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 POC1AQ8NBT0 407 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 DYRK2Q92630 601 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 TBX15Q96SF7 602 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 CHRNA10Q9GZZ6 450 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 SLC35D1Q9NTN3 355 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 HOXA5P20719 270 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 VDAC1P21796 283 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 GPR12P47775 334 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 LIN7CQ9NUP9 197 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 LHFPL6Q9Y693 200 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 KIAA1324LA8MWY0 1029 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 TRAF3IP2O43734 574 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 CDS2O95674 445 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 PIGYQ3MUY2 71 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 TIGITQ495A1 244 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 FFAR4Q5NUL3 377 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 WDR25Q64LD2 544 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 EGLN1Q9GZT9 426 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 CBLN4Q9NTU7 201 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 UTRNP46939 3433 aa14.16□□□□□ -0.14
CCDC88B-209ENST00000494080 COX6A1P12074 109 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 HES7Q9BYE0 225 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 RTN4RQ9BZR6 473 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 CHST5Q9GZS9 411 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF71Q9NQZ8 489 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 SLC7A10Q9NS82 523 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 AURKAIP1Q9NWT8 199 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 RNF126Q9BV68 326 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 TTTY12Q9BZ98 90 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 FAM117AQ9C073 453 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 BDP1A6H8Y1 2624 aa14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF891A8MT65 544 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-209ENST00000494080 NGFP01138 241 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms