RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 M0R1B8 84 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 JTBO76095 146 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 ALKBH2Q6NS38 261 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 BOLLQ8N9W6 283 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 CLEC18CQ8NCF0 446 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 LPAR3Q9UBY5 353 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 DSPP15924 2871 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 LAMA5O15230 3695 aa17.77■□□□□ 0.44
CCDC88B-208ENST00000492980 TMEM30CPA0ZSE6 113 aa17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 WNT2P09544 360 aa17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 VDAC1P21796 283 aa17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 EIF5AL1Q6IS14 154 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 PRR7Q8TB68 274 aa17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 HEATR1Q9H583 2144 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 SSUH2Q9Y2M2 353 aa17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 TMA7Q9Y2S6 64 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-208ENST00000492980 BOD1L1Q8NFC6 3051 aa17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 HSPA12AO43301 675 aa17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 PTBP3O95758 552 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 HEXAP06865 529 aa17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 NKX2-1P43699 371 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 LRP11Q86VZ4 500 aa17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 ABHD17AQ96GS6 310 aa17.76■□□□□ 0.43
CCDC88B-208ENST00000492980 ZNF705EA8MWA4 302 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 TFF1P04155 84 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 GNMTQ14749 295 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 MST1LQ2TV78 715 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 C3orf36Q3SXR2 165 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 SLC35E4Q6ICL7 350 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 UBAC2Q8NBM4 344 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 OR51H1Q8NH63 302 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 PARP12Q9H0J9 701 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 WFDC1Q9HC57 220 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 RAB19A4D1S5 217 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 ZSCAN5BA6NJL1 495 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 MZT1Q08AG7 82 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 FOXC1Q12948 553 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 BPIFCQ8NFQ6 507 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 OR2Z1Q8NG97 314 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 ABHD14BQ96IU4 210 aa17.75■□□□□ 0.43
CCDC88B-208ENST00000492980 POLR2GP62487 172 aaKnown RBP eCLIP17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 SMIM21Q3B7S5 101 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 UQCC3Q6UW78 93 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 SUN5Q8TC36 379 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 COQ2Q96H96 371 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 AKR1E2Q96JD6 320 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 SMIM8Q96KF7 97 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 ARV1Q9H2C2 271 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 PLA2G2EQ9NZK7 142 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 DUSP13Q9UII6 198 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 TP53TG5Q9Y2B4 290 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 MGAQ8IWI9 3026 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 HOXD4P09016 255 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 PSG2P11465 335 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 M6PRP20645 277 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 CEACAM6P40199 344 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 OR3A1P47881 315 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 AESQ08117 197 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 CXorf66Q5JRM2 361 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 FAM209AQ5JX71 171 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 ARL11Q969Q4 196 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 MUCL1Q96DR8 90 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 SAT2Q96F10 170 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 KCNIP1Q9NZI2 227 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 METRNQ9UJH8 293 aa17.74■□□□□ 0.43
CCDC88B-208ENST00000492980 FBXO24O75426 580 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 CRYAAP02489 173 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 CD200P41217 278 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 SULT1A2P50226 295 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 OR1L1Q8NH94 360 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 LRRC29Q8WV35 223 aa17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 CHD3Q12873 2000 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-208ENST00000492980 C12orf77C9JDV5 145 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 IFNL4K9M1U5 179 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 IGHV3-13P01766 116 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 TDGF1P3P51864 188 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 NKX6-1P78426 367 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 NHLH2Q02577 135 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 COL10A1Q03692 680 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 MMP26Q9NRE1 261 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 KCNS2Q9ULS6 477 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 PPP1R3CQ9UQK1 317 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 SPEF1Q9Y4P9 236 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 RBM7Q9Y580 266 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 SERPINE2P07093 398 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 OR8U9P0C7N5 309 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 GLRXP35754 106 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 EWSR1Q01844 656 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 ID3Q02535 119 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 SPACA3Q8IXA5 215 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 OR2C3Q8N628 320 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 OR8U1Q8NH10 309 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 COL25A1Q9BXS0 654 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 MS4A7Q9GZW8 240 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 MAGT1Q9H0U3 335 aa17.72■□□□□ 0.43
CCDC88B-208ENST00000492980 A0A0G2JRQ6 117 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 OOEPA6NGQ2 149 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 A8MXE2 369 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 NUDT19A8MXV4 375 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 SSSCA1O60232 199 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms