RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 ERVFRD-1P60508 538 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 RPP30P78346 268 aaKnown RBP11.12□□□□□ -0.63
SHOX2-205ENST00000490689 LURAP1LQ8IV03 231 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 VPS25Q9BRG1 176 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 LYRM2Q9NU23 88 aaPredicted RBP11.12□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF407Q9C0G0 2248 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 CELA2AP08217 269 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 FOLR2P14207 255 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 EIF3IQ13347 325 aaKnown RBP11.12□□□□□ -0.63
SHOX2-205ENST00000490689 ELOBQ15370 118 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 NUFIP2Q7Z417 695 aaKnown RBP11.12□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF573Q86YE8 665 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 AGBL5Q8NDL9 886 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 NANOS1Q8WY41 292 aaKnown RBP11.12□□□□□ -0.63
SHOX2-205ENST00000490689 APH1AQ96BI3 265 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 CTDSP1Q9GZU7 261 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 CLCF1Q9UBD9 225 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 ANAPC1Q9H1A4 1944 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 LOC390937A0A1W2PQ73 354 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 C5orf63A6NC05 138 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 HSBP1L1C9JCN9 74 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 OR7C2O60412 319 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 GYPAP02724 150 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 CRISP2P16562 243 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF124Q15973 351 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 SLC25A47Q6Q0C1 308 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 OIT3Q8WWZ8 545 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 MOB3AQ96BX8 217 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 MUCL1Q96DR8 90 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 PLXNA4Q9HCM2 1894 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 IGHV3-43A0A0B4J1X8 118 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 IGHV3-43DP0DP04 118 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 AMTP48728 403 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 CDC34P49427 236 aaPredicted RBP11.11□□□□□ -0.63
SHOX2-205ENST00000490689 HNRNPA3P51991 378 aaKnown RBP11.11□□□□□ -0.63
SHOX2-205ENST00000490689 MEF2BQ02080 365 aaPredicted RBP11.11□□□□□ -0.63
SHOX2-205ENST00000490689 TMEM164Q5U3C3 297 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 TMEM211Q6ICI0 200 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 BTNL3Q6UXE8 466 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 SGMS2Q8NHU3 365 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 IFI44Q8TCB0 444 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 CYYR1Q96J86 154 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 TUBD1Q9UJT1 453 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 DBX1A6NMT0 343 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 TCF21O43680 179 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 CCL3P10147 92 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 RBM11P57052 281 aaKnown RBP11.11□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF784Q8NCA9 323 aaPredicted RBP11.11□□□□□ -0.63
SHOX2-205ENST00000490689 OR2M3Q8NG83 312 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 GOLT1BQ9Y3E0 138 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 FER1L5A0AVI2 2057 aa11.11□□□□□ -0.63
SHOX2-205ENST00000490689 ST8SIA5O15466 376 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 CBR3O75828 277 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 CYB561P49447 251 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 THBS3P49746 956 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 DSCR4P56555 118 aaPredicted RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 SLC35B1P78383 322 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 FNDC7Q5VTL7 733 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 PRR27Q6MZM9 219 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF818PQ6ZRF7 136 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 GALNT14Q96FL9 552 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 OR4C12Q96R67 309 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 CLN8Q9UBY8 286 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 GRIFINA4D1Z8 144 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 CNN1P51911 297 aaKnown RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 SUCLG1P53597 346 aaKnown RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 TAS2R60P59551 318 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 COL10A1Q03692 680 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 DMWDQ09019 674 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 GUSBP11Q6P575 273 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 C5orf24Q7Z6I8 188 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 GCNT2Q8N0V5 402 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 VWCEQ96DN2 955 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 NOL4LQ96MY1 436 aaPredicted RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 BOKQ9UMX3 212 aaPredicted RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 A0A0U1RQV5 110 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 LRRC3CA6NJW4 275 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 F2RP25116 425 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 TMEM183BQ1AE95 376 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 SELENOHQ8IZQ5 122 aaKnown RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF331Q9NQX6 463 aaPredicted RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 DUSP13Q9UII6 198 aa11.1□□□□□ -0.63
SHOX2-205ENST00000490689 EP300Q09472 2414 aaPredicted RBP11.1□□□□□ -0.63
SHOX2-205ENST00000490689 A0A0C4DFX4 3053 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 LRP5LA4QPB2 252 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 PTTG1IPP53801 180 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 VHLLQ6RSH7 139 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 POC1BQ8TC44 478 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 GPR146Q96CH1 333 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 RIMS4Q9H426 269 aaPredicted RBP11.09□□□□□ -0.63
SHOX2-205ENST00000490689 CER1O95813 267 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 CCKARP32238 428 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 CCL7P80098 99 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 TIGITQ495A1 244 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 OR10D3Q8NH80 312 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 ABHD3Q8WU67 409 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 MISP3Q96FF7 219 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 SPTBN1Q01082 2364 aaKnown RBP11.09□□□□□ -0.63
SHOX2-205ENST00000490689 G6PCP35575 357 aa11.09□□□□□ -0.63
SHOX2-205ENST00000490689 CXCL12P48061 93 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms