RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 RIMBP3Q9UFD9 1639 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 ZNF638Q14966 1978 aaKnown RBP0.84□□□□□ -2.28
SMC4-220ENST00000488017 FANCAO15360 1455 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 ERCC6Q03468 1493 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 PRXQ9BXM0 1461 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 BTAF1O14981 1849 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 CITO14578 2027 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 DOCK3Q8IZD9 2030 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 DOCK6Q96HP0 2047 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 E9PCH4 1651 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 CFAP43Q8NDM7 1665 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 QRICH2Q9H0J4 1663 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 CLUHO75153 1309 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 ANK1P16157 1881 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 FER1L6Q2WGJ9 1857 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 ITSN1Q15811 1721 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 NUP188Q5SRE5 1749 aa0.84□□□□□ -2.28
SMC4-220ENST00000488017 TRPM3Q9HCF6 1732 aaPredicted RBP0.84□□□□□ -2.28
SMC4-220ENST00000488017 RTL1A6NKG5 1358 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MYLKQ15746 1914 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MTUS2Q5JR59 1369 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 KIAA0232Q92628 1395 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 KIF15Q9NS87 1388 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PCF11O94913 1555 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 ARFGEF2Q9Y6D5 1785 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SCN8AQ9UQD0 1980 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 UHRF1BP1Q6BDS2 1440 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CD109Q6YHK3 1445 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 KIF14Q15058 1648 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PREX2Q70Z35 1606 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RAPGEF6Q8TEU7 1601 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 A0A1B0GV90 55 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PVALEFA0A1B0GWK0 134 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 C9orf170A2RU37 121 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SIGLEC16A6NMB1 481 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 C9JQL5 133 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 D6RAR5 112 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 F8W036 122 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 H7C2Y5 167 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 K7EN84 100 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 K7EPK0 472 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 M0R1B8 84 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CCRL2O00421 344 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ITGB1BP1O14713 200 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 FFAR1O14842 300 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLC22A1O15245 554 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 COCHO43405 550 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 GMDSO60547 372 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CRTAPO75718 401 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 ETHE1O95571 254 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 LDOC1O95751 146 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 SNAI1O95863 264 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 DHFRP00374 187 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 IGHV3-53P01767 116 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RLN2P04090 185 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 GUSBP08236 651 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CTSGP08311 255 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 OR5AL1P0C617 328 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PTHLHP12272 177 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CCL2P13500 99 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MSR1P21757 451 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 IMPA1P29218 277 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SERPINB1P30740 379 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 FUSP35637 526 aaKnown RBP eCLIP0.83□□□□□ -2.28
SMC4-220ENST00000488017 P2RY2P41231 377 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLCO1A2P46721 670 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CDC34P49427 236 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 AP2S1P53680 142 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 EMP2P54851 167 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 TAS2R60P59551 318 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 UBE2G2P60604 165 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CXCR4P61073 352 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RAB14P61106 215 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SKP1P63208 163 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 TPM4P67936 248 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 GLO1Q04760 184 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 TSPAN31Q12999 210 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 GPR176Q14439 515 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 POU6F1Q14863 301 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 TAF1AQ15573 450 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 WHAMMP3Q1A5X7 153 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 LGALSLQ3ZCW2 172 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 ZCWPW2Q504Y3 356 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ACSBG2Q5FVE4 666 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PTRHD1Q6GMV3 140 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLC25A25Q6KCM7 469 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ZNF773Q6PK81 442 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 DHRS4L2Q6PKH6 230 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 C5orf46Q6UWT4 87 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 DCXRQ7Z4W1 244 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 LINC00523Q86TU6 105 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 STX12Q86Y82 276 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ST13P4Q8IZP2 240 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 TBC1D19Q8N5T2 526 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ASCC1Q8N9N2 400 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 CCDC112Q8NEF3 446 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 OR5D18Q8NGL1 313 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 OR2V1Q8NHB1 315 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 NT5CQ8TCD5 201 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 C2orf15Q8WU43 125 aaKnown RBP0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms