RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 HEPN1Q6WQI6 88 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 Q6ZPA2 131 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 C1orf122Q6ZSJ8 110 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 BTN2A1Q7KYR7 527 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 NRARPQ7Z6K4 114 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 LHFPL1Q86WI0 220 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 KIR3DL3Q8N743 410 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 LY6G5BQ8NDX9 201 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 OR51S1Q8NGJ8 323 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 OR13A1Q8NGR1 328 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 OR56B4Q8NH76 319 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 ZFAND1Q8TCF1 268 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 CCDC107Q8WV48 283 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 EDARADDQ8WWZ3 215 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 ARL11Q969Q4 196 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 PERPQ96FX8 193 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 FAHD2AQ96GK7 314 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 ZNF486Q96H40 463 aaPredicted RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 KIRREL1Q96J84 757 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 ZNF714Q96N38 554 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 GINS4Q9BRT9 223 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 MARVELD1Q9BSK0 173 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 TINAGL1Q9GZM7 467 aaPredicted RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 ALX4Q9H161 411 aaPredicted RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 CALYQ9NYX4 217 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 RPUSD1Q9UJJ7 312 aaKnown RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 DSCAML1Q8TD84 2053 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 IGKV1D-8A0A087WSZ0 117 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 LINC00854A0A1B0GVQ3 168 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 M0QYG6 137 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 M0R1W7 72 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 HSPA12AO43301 675 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 YPEL1O60688 119 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 PRAF2O60831 178 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 HBZP02008 142 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 ZNF728P0DKX0 622 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 SELLP14151 372 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 UBE2MP61081 183 aaKnown RBP8.4□□□□□ -1.06
USP39-215ENST00000481409 LMO4P61968 165 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 TMEM200BQ69YZ2 307 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 C11orf88Q6PI97 169 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 CCBE1Q6UXH8 406 aaPredicted RBP8.4□□□□□ -1.06
USP39-215ENST00000481409 IDO2Q6ZQW0 420 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 H1FOOQ8IZA3 346 aaPredicted RBP8.4□□□□□ -1.06
USP39-215ENST00000481409 CENPSQ8N2Z9 138 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 C8orf31Q8N9H6 132 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 OR4D10Q8NGI6 311 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 MRGPRDQ8TDS7 321 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 MAFIPQ8WZ33 124 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 H1FXQ92522 213 aaKnown RBP8.4□□□□□ -1.06
USP39-215ENST00000481409 MOB3AQ96BX8 217 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 YPEL2Q96QA6 119 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 SLC6A7Q99884 636 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 ZNF2Q9BSG1 426 aaPredicted RBP8.4□□□□□ -1.06
USP39-215ENST00000481409 IDI2-AS1Q9NZ38 188 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 OR2W1Q9Y3N9 320 aa8.4□□□□□ -1.06
USP39-215ENST00000481409 HELZ2Q9BYK8 2649 aaKnown RBP8.4□□□□□ -1.07
USP39-215ENST00000481409 USF3Q68DE3 2245 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 LOC105371242A0A075B767 164 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 A0A087X0M5 115 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 PIGBOS1A0A0B4J2F0 54 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 A0A1B0GW55 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 A0A1B0GX30 115 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 C17orf98A8MV24 154 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 BET1O15155 118 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 ENSAO43768 121 aaKnown RBP8.39□□□□□ -1.07
USP39-215ENST00000481409 DHFRP00374 187 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 PPYP01298 95 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 TFF1P04155 84 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L2P0CJ85 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L3P0CJ86 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L4P0CJ87 422 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L5P0CJ88 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L6P0CJ89 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L7P0CJ90 424 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 PPIAL4GP0DN37 164 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 S100GP29377 79 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 FCGR2CP31995 323 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 RAB7AP51149 207 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 TAS2R31P59538 309 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 KRTAP10-9P60411 292 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 HERV-K104P61576 105 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 HERPUD1Q15011 391 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 C17orf58Q2M2W7 97 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 SCGB2B2Q4G0G5 96 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 IGSF11Q5DX21 431 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4L9Q6RFH8 374 aaPredicted RBP8.39□□□□□ -1.07
USP39-215ENST00000481409 SLC38A6Q8IZM9 456 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 FAM185AQ8N0U4 392 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 TPRX1Q8N7U7 411 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 ZBTB34Q8NCN2 500 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 CLDND2Q8NHS1 167 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 TNFRSF14Q92956 283 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 C1orf159Q96HA4 380 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 AKR1E2Q96JD6 320 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 FOXC2Q99958 501 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 OR2S2Q9NQN1 319 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 C19orf12Q9NSK7 152 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 ING3Q9NXR8 418 aa8.39□□□□□ -1.07
USP39-215ENST00000481409 DUX4Q9UBX2 424 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms