RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 MYDGFQ969H8 173 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 GFOD1Q9NXC2 390 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 MOB4Q9Y3A3 225 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 MYL12BO14950 172 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 ORC5O43913 435 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 CDK1P06493 297 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 FAM106CPP0CH98 169 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 REG1BP48304 166 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 RAB7AP51149 207 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 EBI3Q14213 229 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 CENPVQ7Z7K6 275 aaPredicted RBP11.17□□□□□ -0.62
UPF3A-204ENST00000475218 OR8H3Q8N146 312 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 LINC00311Q8N616 119 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 Q8N6K4 173 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 WFDC9Q8NEX5 89 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 OR4F17Q8NGA8 305 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 MRPS24Q96EL2 167 aaKnown RBP11.17□□□□□ -0.62
UPF3A-204ENST00000475218 Q96M66 194 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 OR4F4Q96R69 305 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 S100A13Q99584 98 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 PCDHB16Q9NRJ7 776 aa11.17□□□□□ -0.62
UPF3A-204ENST00000475218 IGHV1-3A0A0C4DH29 117 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 AIPO00170 330 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 SDCBPO00560 298 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-204ENST00000475218 HSD17B6O14756 317 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 SC5DO75845 299 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 IGKV1D-33P01593 117 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 IGKV1-33P01594 117 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 MGMTP16455 207 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 RCC1P18754 421 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF134P52741 427 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 GPR176Q14439 515 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 HNF4GQ14541 408 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 RNLSQ5VYX0 342 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 AWAT2Q6E213 333 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 RAB12Q6IQ22 244 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 Q6ZPA2 131 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 LRRTM1Q86UE6 522 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 C8orf31Q8N9H6 132 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 OR10X1Q8NGY0 326 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 OR4K15Q8NH41 348 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 COL7A1Q02388 2944 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 IGHV3-72A0A0B4J1Y9 119 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 LINC01548A6NM66 108 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 H3BUI4 141 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 M0QZK8 103 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 TMEM11P17152 192 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 AQP4P55087 323 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 IRF3Q14653 427 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 C6orf141Q5SZD1 244 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 SYT6Q5T7P8 510 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-204ENST00000475218 OR1L1Q8NH94 360 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 NEK7Q8TDX7 302 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 NOL4LQ96MY1 436 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-204ENST00000475218 SELENOIQ9C0D9 397 aa11.16□□□□□ -0.62
UPF3A-204ENST00000475218 TCRBV4S1A1TA0A5B7 111 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF736B4DX44 427 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-204ENST00000475218 CCRL2O00421 344 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 ACSM3Q53FZ2 586 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 CT45A1Q5HYN5 189 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 C9orf152Q5JTZ5 239 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF329Q86UD4 541 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 CT45A3Q8NHU0 189 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 RTN4IP1Q8WWV3 396 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-204ENST00000475218 FAM46BQ96A09 425 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 PHF21AQ96BD5 680 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 PPP1R14BQ96C90 147 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 EAF1Q96JC9 268 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-204ENST00000475218 SPACA1Q9HBV2 294 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 PLSCR3Q9NRY6 295 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 MBNL3Q9NUK0 354 aaKnown RBP11.15□□□□□ -0.62
UPF3A-204ENST00000475218 TSSC4Q9Y5U2 329 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-204ENST00000475218 PEX16Q9Y5Y5 336 aa11.15□□□□□ -0.62
UPF3A-204ENST00000475218 FAM90A10PA6NDY2 464 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 FAM90A7PA6NKC0 464 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 FAM90A23PA8MXZ1 464 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 MCRIP1C9JLW8 97 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 HBZP02008 142 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 CD37P11049 281 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 IGLL1P15814 213 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 ZNF137PP52743 207 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 HES1Q14469 280 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 OR10K2Q6IF99 312 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 ETV3LQ6ZN32 361 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 SLC25A48Q6ZT89 311 aaKnown RBP11.14□□□□□ -0.63
UPF3A-204ENST00000475218 IZUMO1Q8IYV9 350 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 NKAIN3Q8N8D7 197 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 UQCC2Q9BRT2 126 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 KCNK15Q9H427 330 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 LINC00527Q9UJ94 153 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 ERGIC3Q9Y282 383 aa11.14□□□□□ -0.63
UPF3A-204ENST00000475218 UBE2QL1A1L167 161 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 PTGES3LE9PB15 166 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 FGF16O43320 207 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 CRTAPO75718 401 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-204ENST00000475218 IGHG2P01859 326 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 GAPDHP04406 335 aaKnown RBP11.13□□□□□ -0.63
UPF3A-204ENST00000475218 FUT3P21217 361 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 SLC35A2P78381 396 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 GNMTQ14749 295 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms