RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ABHD14AQ9BUJ0 271 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 LINC00862A6NCI5 91 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 CEBPZOSA8MTT3 80 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 MSTNO14793 375 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 GLAP06280 429 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 SNRPCP09234 159 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 HIST1H3AP68431 136 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 HIST2H3PS2Q5TEC6 136 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 RTL6Q6ICC9 239 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 HIST2H3AQ71DI3 136 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 DMBX1Q8NFW5 382 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 SLC2A8Q9NY64 477 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 TRAV24A0A0B4J272 114 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 FAM74A7A6NL05 159 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 FGF8P55075 233 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 FAM74A3Q4VXF1 159 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 MIDNQ504T8 468 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 BHLHA15Q7RTS1 189 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 TRAF4Q9BUZ4 470 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 TM2D1Q9BX74 207 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 POLDIP2Q9Y2S7 368 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 ATP23Q9Y6H3 246 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 ZFP92A6NM28 416 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 TM4SF5O14894 197 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 G6PCP35575 357 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 OR2B8PP59922 312 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 ASCL3Q9NQ33 180 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 TRDCB7Z8K6 153 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 BVESQ8NE79 360 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 MLXQ9UH92 298 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 TP53TG5Q9Y2B4 290 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 PQLC2LA1A4F0 135 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 CRYM-AS1A6NIL9 109 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 J3QT63 122 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 PSPNO60542 156 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 NKX6-1P78426 367 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 NTNG2Q96CW9 530 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 PLK3Q9H4B4 646 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 RHOFQ9HBH0 211 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 DCAF16Q9NXF7 216 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 TAAR3PQ9P1P4 343 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 GLS2Q9UI32 602 aa11.67□□□□□ -0.54
CCDC88A-211ENST00000471947 APELAP0DMC3 54 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 RPL35P42766 123 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 LPAR6P43657 344 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 COL10A1Q03692 680 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 TESK1Q15569 626 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 ZNF674Q2M3X9 581 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 CCDC54Q8NEL0 328 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 ISOC2Q96AB3 205 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 RNF122Q9H9V4 155 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 KALRNO60229 2985 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 ZNF724A8MTY0 619 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 PRRG2O14669 202 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 ABCD4O14678 606 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 HKR1P10072 659 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 HERPUD1Q15011 391 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 GABRA6Q16445 453 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 Q9N2K0 584 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 RCC2Q9P258 522 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 PURGQ9UJV8 347 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 MPC1Q9Y5U8 109 aa11.66□□□□□ -0.54
CCDC88A-211ENST00000471947 B3GALNT1O75752 331 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 CYB5R3P00387 301 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 ASCL5Q7RTU5 278 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 POC1AQ8NBT0 407 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 SCGB1C1Q8TD33 95 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 TMEM45BQ96B21 275 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 OR2V2Q96R30 315 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 DOPEY2Q9Y3R5 2298 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 IGKV3D-15A0A087WSY6 115 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 DEFA4P12838 97 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 TMEM187Q14656 261 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 WDR86Q86TI4 376 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 ITLN1Q8WWA0 313 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 REG1BP48304 166 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 DYNLT3P51808 116 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 EIF5AP63241 154 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 AKR1C8PQ5T2L2 129 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 Q6ZPA2 131 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 DNM1P46Q6ZS02 220 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 SPAG16Q8N0X2 631 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 NMES1Q9C002 83 aa11.65□□□□□ -0.54
CCDC88A-211ENST00000471947 IGKV1-6A0A0C4DH72 117 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 FCGR3BO75015 233 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 FBP1P09467 338 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 C1QTNF12Q5T7M4 302 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 Q6ZT83 130 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 OR2C3Q8N628 320 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 GALMQ96C23 342 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 C10orf35Q96D05 121 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 DYNLRB1Q9NP97 96 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 A0A1W2PRD5 423 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 A0A1W2PRF3 423 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 A0A1W2PRM7 423 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 OR5B21A6NL26 309 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 E5RGE8 158 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 PTBP3O95758 552 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 DTYMKP23919 212 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM211Q6ICI0 200 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms