RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MXD1Q05195 221 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 MEF2CQ06413 473 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 PRDX4Q13162 271 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SSX1Q16384 188 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 NSUN5P1Q3KNT7 163 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF876PQ49A33 203 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 FAM201AQ5SY85 155 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 NCMAPQ5T1S8 102 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 GLYATQ6IB77 296 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ARL9Q6T311 187 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF497Q6ZNH5 498 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 HSD17B13Q7Z5P4 300 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 TGIF2LYQ8IUE0 185 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SNX29P2Q8IUI4 249 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF615Q8N8J6 731 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 KBTBD8Q8NFY9 601 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 OR2T4Q8NH00 348 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 MBD3L1Q8WWY6 194 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 RXFP2Q8WXD0 754 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 FGF14Q92915 247 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 PLEKHB2Q96CS7 222 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 C2orf48Q96LS8 159 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 PBDC1Q9BVG4 233 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 CDC42EP4Q9H3Q1 356 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SPHK2Q9NRA0 654 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 MRPL16Q9NX20 251 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 RPS6KB2Q9UBS0 482 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 TRAPPC2LQ9UL33 140 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 TNFSF18Q9UNG2 199 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ST3GAL6Q9Y274 331 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 PPP2R2CQ9Y2T4 447 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SELENOKQ9Y6D0 94 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 MED14O60244 1454 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ABCC10Q5T3U5 1492 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ARID2Q68CP9 1835 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 YLPM1P49750 1951 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 MYH14Q7Z406 1995 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF850A8MQ14 1090 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 A8MWP6 167 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 ATP6V0E1O15342 81 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 TRMUO75648 421 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 EPPINO95925 133 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 NRASP01111 189 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 HBZP02008 142 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 OPN1SWP03999 348 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 ATP5G1P05496 136 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 CSN2P05814 226 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 RAB3BP20337 219 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 PRTN3P24158 256 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 CNTFRP26992 372 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 CMPK1P30085 196 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 GPR6P46095 362 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 GABRA2P47869 451 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 POLR2HP52434 150 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 PSG9Q00887 426 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 BATFQ16520 125 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 NRF1Q16656 503 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 LINC00242Q5T6M2 205 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 IL34Q6ZMJ4 242 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 DGAT2L6Q6ZPD8 337 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 CROCCP2Q86T23 111 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 H1FOOQ8IZA3 346 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 FTMTQ8N4E7 242 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 PRSS33Q8NF86 280 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 OR10G6Q8NH81 332 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 OR1L1Q8NH94 360 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 NAT14Q8WUY8 206 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 RDH12Q96NR8 316 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 IP6K3Q96PC2 410 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 LYSMD1Q96S90 227 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 ATOH8Q96SQ7 321 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 SNHG12Q9BXW3 62 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 GNB1LQ9BYB4 327 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM222Q9H0R3 208 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 LPAR5Q9H1C0 372 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 OR52D1Q9H346 318 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 KCNIP1Q9NZI2 227 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 METTL1Q9UBP6 276 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 SLC2A6Q9UGQ3 507 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 SCP2D1Q9UJQ7 156 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 HS3ST2Q9Y278 367 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 ARHGAP23Q9P227 1491 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 TAF1P21675 1872 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 USP6P35125 1406 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 SSH2Q76I76 1423 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 MIA2Q96PC5 1412 aa3.77□□□□□ -1.81
CCDC88A-210ENST00000468534 CARMIL3Q8ND23 1372 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TP53BP1Q12888 1972 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 MYO15BQ96JP2 1530 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ADAMTSL3P82987 1691 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 GRIN2BQ13224 1484 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAV30A0A087WSZ9 112 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAV38-1A0A0B4J264 116 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 A0A1B0GXF2 115 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 GMNCA6NCL1 334 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 C8orf87E5RJ46 101 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 INMT-MINDY4F8WBC2 141 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 I3L4J1 428 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 SNAP91O60641 907 aa3.76□□□□□ -1.81
CCDC88A-210ENST00000468534 ARL6IP5O75915 188 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms