RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PCP4L1A6NKN8 68 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 IGLV2-14P01704 120 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 GRPP07492 148 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 ATP6V0CP27449 155 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 AKR1C3P42330 323 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 UCP2P55851 309 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 ERVK11-1P61568 191 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 HOXA4Q00056 320 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-217ENST00000466159 PSG7Q13046 419 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 MRPL49Q13405 166 aaKnown RBP7.58□□□□□ -1.2
SYNE1-217ENST00000466159 OR10V1Q8NGI7 309 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 OR1J1Q8NGS3 322 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 FAM213BQ8TBF2 198 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 CABLES2Q9BTV7 478 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 ABHD14AQ9BUJ0 271 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 CLCF1Q9UBD9 225 aa7.58□□□□□ -1.2
SYNE1-217ENST00000466159 BOD1L1Q8NFC6 3051 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 CACNA1DQ01668 2161 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 K7N7A8 449 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 PITX3O75364 302 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 AGFG2O95081 481 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 NXPH2O95156 264 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 WT1P19544 449 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 PPP1CCP36873 323 aaKnown RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 CEBPDP49716 269 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 DYNLT3P51808 116 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 PAX9P55771 341 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 TGFBR3Q03167 851 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF266Q14584 549 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 TESK1Q15569 626 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 GABRA6Q16445 453 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF497Q6ZNH5 498 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 FAM214BQ7L5A3 538 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 CNEP1R1Q8N9A8 125 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 OR2G3Q8NGZ4 309 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 GPR146Q96CH1 333 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 SLC25A31Q9H0C2 315 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 TRAPPC2LQ9UL33 140 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 PPP1R3CQ9UQK1 317 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 RNF115Q9Y4L5 304 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 SVILO95425 2214 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 SPAARA0A1B0GVQ0 90 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 HSPA12AO43301 675 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 SERPINE2P07093 398 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 LMO1P25800 156 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 MPV17P39210 176 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 RAB5CP51148 216 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 FLI1Q01543 452 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 Q6ZRM9 215 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 CXorf67Q86X51 503 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 DEFB124Q8NES8 71 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 IL22RA2Q969J5 263 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 MLXQ9UH92 298 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 TINAGQ9UJW2 476 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 POLDIP2Q9Y2S7 368 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 STRAPQ9Y3F4 350 aaKnown RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 FBXO7Q9Y3I1 522 aa7.57□□□□□ -1.2
SYNE1-217ENST00000466159 KLF2Q9Y5W3 355 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-217ENST00000466159 LAMA5O15230 3695 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 CDRT15L2A8MXV6 281 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 H3BP45 60 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 J3QW42 95 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 WRBO00258 174 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 GPR37O15354 613 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 IGKV1-39P01597 117 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 IGHG3P01860 377 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 IGKV1D-39P04432 117 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 PGA5P0DJD9 388 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 RAC2P15153 192 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 S100GP29377 79 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 RUNX1Q01196 453 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 PEA15Q15121 130 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 VWA1Q6PCB0 445 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 Q6ZT83 130 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 COMMD1Q8N668 190 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 KLF14Q8TD94 323 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 RXFP4Q8TDU9 374 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 ABHD14BQ96IU4 210 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 SAV1Q9H4B6 383 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 OR14J1Q9UGF5 321 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 RBM7Q9Y580 266 aaKnown RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 KPTNQ9Y664 436 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 OTOGLQ3ZCN5 2332 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 MEX3AA1L020 520 aaKnown RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 IQCF6A8MYZ5 107 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 HEXAP06865 529 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF16P17020 682 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 MDH2P40926 338 aaKnown RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 CCL20P78556 96 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 OR8G1Q15617 311 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF826PQ6ZT77 177 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 Q8IYB0 196 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF295-AS1Q8N0V1 137 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 TREM2Q9NZC2 230 aa7.56□□□□□ -1.2
SYNE1-217ENST00000466159 CNOT1A5YKK6 2376 aaKnown RBP7.56□□□□□ -1.2
SYNE1-217ENST00000466159 INTS1Q8N201 2190 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 KIAA1324LA8MWY0 1029 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 NPIPB11E5RHQ5 1161 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 SH2D1BO14796 132 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms