RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FAM90A23PA8MXZ1 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 H0Y980 276 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 IGHV3-13P01766 116 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 IGHV3-7P01780 117 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A15PP0C7V4 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A13PP0C7W8 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A14PP0C7W9 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A24PP0C7X0 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 LAMTOR1Q6IAA8 161 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 GPR35Q9HC97 309 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 KLF4O43474 513 aa16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 Q5BKY6 102 aa16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 GMPPAQ96IJ6 420 aaPredicted RBP16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 HDHD3Q9BSH5 251 aaPredicted RBP16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM222Q9H0R3 208 aa16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 SRD5A3Q9H8P0 318 aa16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.58■□□□□ 0.25
CCDC88B-204ENST00000463837 FZR1Q9UM11 496 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 RGPD3A6NKT7 1758 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 RGPD4Q7Z3J3 1758 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 hADV38S2A0JD32 116 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 HAND1O96004 215 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 RBP4P02753 201 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 VWA1Q6PCB0 445 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 SPNS3Q6ZMD2 512 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 ELOVL1Q9BW60 279 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 CFHR5Q9BXR6 569 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 A8MXK9 166 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 C5orf67F2Z3F1 127 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 GZMHP20718 246 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 FAM27BQ5VT28 67 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 FNDC7Q5VTL7 733 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 MOB3AQ96BX8 217 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 OR1A1Q9P1Q5 309 aa16.58■□□□□ 0.24
CCDC88B-204ENST00000463837 FHL5Q5TD97 284 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 STARD4Q96DR4 205 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 MS4A3Q96HJ5 214 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 AURKAIP1Q9NWT8 199 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 MISP3Q96FF7 219 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 KCNE5Q9UJ90 142 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 CARHSP1Q9Y2V2 147 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 PAM16Q9Y3D7 125 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 DMRT1Q9Y5R6 373 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 SPINT1O43278 529 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 KCNK17Q96T54 332 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 SEMA7AO75326 666 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 PSG2P11465 335 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 ZXDCQ2QGD7 858 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 PDPNQ86YL7 162 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 ZNF519Q8TB69 540 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 IL36GQ9NZH8 169 aa16.57■□□□□ 0.24
CCDC88B-204ENST00000463837 LOC105371267A0A1B0GV96 52 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 TMEM210A6NLX4 147 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 OR2Y1Q8NGV0 311 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 AMELYQ99218 206 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 SEBOXQ9HB31 216 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 TSPAN2O60636 221 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 NEURL1O76050 574 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 ZP1P60852 638 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 Q1RN00 199 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 PLPPR5Q32ZL2 321 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 ANKRD55Q3KP44 614 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 MOB3BQ86TA1 216 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 TGIF2LXQ8IUE1 241 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 RNF122Q9H9V4 155 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 SUCLG1P53597 346 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 B2MP61769 119 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 TMEM108Q6UXF1 575 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 SRSF10O75494 262 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 CDX1P47902 265 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 HIST3H3Q16695 136 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 LINC01590Q5TEZ4 76 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 PRNDQ9UKY0 176 aa16.56■□□□□ 0.24
CCDC88B-204ENST00000463837 HELTA6NFD8 242 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 SMIM10L1P0DMW3 83 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 PSG5Q15238 335 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 SMIM10Q96HG1 83 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 METTL1Q9UBP6 276 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 C1QL1O75973 258 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 CSN3P07498 182 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 DANCRP0C864 163 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 LIFP15018 202 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 OR4P4Q8NGL7 312 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 NPTNQ9Y639 398 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 MYO16Q9Y6X6 1858 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 SBF2Q86WG5 1849 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 MRPL54Q6P161 138 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 SSMEM1Q8WWF3 244 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 EIF3GO75821 320 aaKnown RBP eCLIP16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 MT-ND6P03923 174 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 PRF1P14222 555 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 MRPS11P82912 194 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 VN1R17PQ8TDU5 208 aa16.55■□□□□ 0.24
CCDC88B-204ENST00000463837 SCGB1C2P0DMR2 95 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 CD99P14209 185 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 RUNX1Q01196 453 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 NFAM1Q8NET5 270 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 MAP1LC3CQ9BXW4 147 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 COL11A2P13942 1736 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 GAB4Q2WGN9 574 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms