RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TMEM69Q5SWH9 247 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 METTL11BQ5VVY1 283 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 TRAT1Q6PIZ9 186 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 TCF23Q7RTU1 214 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 BCL6BQ8N143 479 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-214ENST00000454018 TPRX1Q8N7U7 411 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 MCFD2Q8NI22 146 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 NXF2Q9GZY0 626 aaKnown RBP7.21□□□□□ -1.26
SYNE1-214ENST00000454018 ING3Q9NXR8 418 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 TAS2R3Q9NYW6 316 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 ONECUT1Q9UBC0 465 aa7.21□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF729A6NN14 1252 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 XRCC3O43542 346 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 HPGDSO60760 199 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CLPXO76031 633 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 NAPSAO96009 420 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CD3GP09693 182 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF728P0DKX0 622 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 GNB3P16520 340 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TALDO1P37837 337 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 PITPNAQ00169 270 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 PAX8Q06710 450 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 PNLIPRP3Q17RR3 467 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 C6orf183Q5T699 404 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TMEM200BQ69YZ2 307 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CLEC9AQ6UXN8 241 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF554Q86TJ5 538 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 LAX1Q8IWV1 398 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TEX29Q8N6K0 151 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF565Q8N9K5 539 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 MRPL30Q8TCC3 161 aaKnown RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 DYRK2Q92630 601 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CORO2AQ92828 525 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CMSS1Q9BQ75 279 aaKnown RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 FAAP24Q9BTP7 215 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 MMP27Q9H306 513 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 METTL8Q9H825 291 aaKnown RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 CHMP1AQ9HD42 196 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 RAB9BQ9NP90 201 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 MBNL3Q9NUK0 354 aaKnown RBP7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TMEM160Q9NX00 188 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 OPN4Q9UHM6 478 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 AK3Q9UIJ7 227 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TRAPPC2LQ9UL33 140 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 MGAT4AQ9UM21 535 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 KCNK7Q9Y2U2 307 aa7.2□□□□□ -1.26
SYNE1-214ENST00000454018 TRBV6-6A0A0A6YYG2 114 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 TMEM235A6NFC5 223 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 A8MV72 311 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-214ENST00000454018 FAM25AB3EWG3 89 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 FAM25CB3EWG5 89 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 FAM25GB3EWG6 89 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 TPPPO94811 219 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 LY6G6DO95868 133 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 MT-ND4P03905 459 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 CCL3L1P16619 93 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 ELK1P19419 428 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 MNDAP41218 407 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 GNG2P59768 71 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 ARFRP1Q13795 201 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 TMEM30BQ3MIR4 351 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF260Q3ZCT1 412 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 HACD4Q5VWC8 232 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 FAHD2BQ6P2I3 314 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-214ENST00000454018 BAIAP2L2Q6UXY1 529 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 RTN4RL2Q86UN3 420 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 DTX3Q8N9I9 347 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 OR13A1Q8NGR1 328 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 MRGPRDQ8TDS7 321 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 FAHD2AQ96GK7 314 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 WDFY2Q96P53 400 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 SMR3AQ99954 134 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 SIRPDQ9H106 197 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 UNKLQ9H9P5 680 aaKnown RBP7.19□□□□□ -1.26
SYNE1-214ENST00000454018 YAE1D1Q9NRH1 226 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 AUP1Q9Y679 476 aa7.19□□□□□ -1.26
SYNE1-214ENST00000454018 TRAV18A0A075B6X5 111 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 KBTBD11-OT1A0A1B0GTJ5 212 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 C17orf98A8MV24 154 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 CTDSP2O14595 271 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 ORC5O43913 435 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 TOX4O94842 621 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 FCGR3AP08637 254 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 MMP9P14780 707 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 GZMHP20718 246 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 HNF1AP20823 631 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-214ENST00000454018 DTYMKP23919 212 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 S100A5P33763 92 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 SSTR5P35346 364 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 DLX6P56179 175 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 TAS2R20P59543 309 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 ERVFRD-1P60508 538 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 ARF6P62330 175 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 CDNFQ49AH0 187 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 C19orf54Q5BKX5 351 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 OLFML2AQ68BL7 652 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 NCR3LG1Q68D85 454 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 ZNF880Q6PDB4 577 aa7.18□□□□□ -1.26
SYNE1-214ENST00000454018 HEPN1Q6WQI6 88 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms