RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 PARP11Q9NR21 331 aa11.76□□□□□ -0.53
HOXC4-202ENST00000430889 TAAR3PQ9P1P4 343 aa11.76□□□□□ -0.53
HOXC4-202ENST00000430889 WASF3Q9UPY6 502 aa11.76□□□□□ -0.53
HOXC4-202ENST00000430889 PRRC2CQ9Y520 2896 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 WNT9BO14905 357 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 SEC11BP0C7V7 166 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 SPP1P10451 314 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 SLC25A6P12236 298 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 MMP9P14780 707 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 NKX2-1P43699 371 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 MSMPQ1L6U9 139 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 WDR82Q6UXN9 313 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ACP7Q6ZNF0 438 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF826PQ6ZT77 177 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 BEND4Q6ZU67 534 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 AKR1E2Q96JD6 320 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 KIAA2026Q5HYC2 2103 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 HEATR1Q9H583 2144 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ASPMQ8IZT6 3477 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 A0A0G2JRQ6 117 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 LOC105371267A0A1B0GV96 52 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 IGSF23A1L1A6 192 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 KIAA1324LA8MWY0 1029 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 K7EM74 188 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 TNFSF12O43508 249 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 PTBP3O95758 552 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 TMEM50AO95807 157 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 IGKV1-39P01597 117 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 APOC3P02656 99 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 IGKV1D-39P04432 117 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 CEBPDP49716 269 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 CAV2P51636 162 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 POLR2GP62487 172 aaKnown RBP eCLIP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 BLOC1S1P78537 153 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 NHLH2Q02577 135 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 BTN1A1Q13410 526 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF273Q14593 569 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 EIF2S3LQ2VIR3 472 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 C3orf36Q3SXR2 165 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF718Q3SXZ3 478 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 CXorf66Q5JRM2 361 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 SLC35E4Q6ICL7 350 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF474Q6S9Z5 364 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 OR2C3Q8N628 320 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 PARP12Q9H0J9 701 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 LYRM2Q9NU23 88 aaPredicted RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 TRAPPC2LQ9UL33 140 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 CARHSP1Q9Y2V2 147 aaKnown RBP11.75□□□□□ -0.53
HOXC4-202ENST00000430889 RNF115Q9Y4L5 304 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 SPEF1Q9Y4P9 236 aa11.75□□□□□ -0.53
HOXC4-202ENST00000430889 IGHV3-64DA0A0J9YX35 117 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 TIMM8AO60220 97 aaPredicted RBP11.74□□□□□ -0.53
HOXC4-202ENST00000430889 FBXO24O75426 580 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 MED6O75586 246 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 ATG12O94817 140 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 PAX5Q02548 391 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 GNMTQ14749 295 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 PRAMEF6Q5VXH4 476 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 FIP1L1Q6UN15 594 aaKnown RBP11.74□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF295-AS1Q8N0V1 137 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 RPRMLQ8N4K4 120 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 LRRC46Q96FV0 321 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 COQ2Q96H96 371 aa11.74□□□□□ -0.53
HOXC4-202ENST00000430889 BORCS7-ASMTA0A0B4J1R7 106 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 TMEM30CPA0ZSE6 113 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 FAM24AA6NFZ4 105 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 DNASE2O00115 360 aaPredicted RBP11.73□□□□□ -0.53
HOXC4-202ENST00000430889 DANCRP0C864 163 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 PSG2P11465 335 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 S100GP29377 79 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 TIMP3P35625 211 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 PAX9P55771 341 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 HOXA4Q00056 320 aaPredicted RBP11.73□□□□□ -0.53
HOXC4-202ENST00000430889 EIF4EBP1Q13541 118 aaPredicted RBP11.73□□□□□ -0.53
HOXC4-202ENST00000430889 C1orf185Q5T7R7 199 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 IL1F10Q8WWZ1 152 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 LSM10Q969L4 123 aaKnown RBP11.73□□□□□ -0.53
HOXC4-202ENST00000430889 GPR146Q96CH1 333 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 FZR1Q9UM11 496 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 SSUH2Q9Y2M2 353 aa11.73□□□□□ -0.53
HOXC4-202ENST00000430889 PIGBOS1A0A0B4J2F0 54 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 A0A1B0GU03 582 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 FAM157AC9JC47 383 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 PROB1E7EW31 1015 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 IFNL4K9M1U5 179 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 CD5P06127 495 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 MUC1P15941 1255 aaPredicted RBP11.72□□□□□ -0.53
HOXC4-202ENST00000430889 CEACAM8P31997 349 aaPredicted RBP11.72□□□□□ -0.53
HOXC4-202ENST00000430889 CD200P41217 278 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 OR3A1P47881 315 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 FABP6P51161 128 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 AKR1C2P52895 323 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 AKR1C1Q04828 323 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 ZNF585BQ52M93 769 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 TIMM23BQ5SRD1 257 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 TMEM252Q8N6L7 170 aa11.72□□□□□ -0.53
HOXC4-202ENST00000430889 TSNAXQ99598 290 aaKnown RBP11.72□□□□□ -0.53
HOXC4-202ENST00000430889 SCRT1Q9BWW7 348 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms