RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 EVPLLA8MZ36 301 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 DISC1C4P0D8 188 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 GYG2O15488 501 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 IFNA14P01570 189 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 SOD3P08294 240 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 CXCL3P19876 107 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 S100A12P80511 92 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 HPCAP84074 193 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 PYCR3Q53H96 274 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 YIF1BQ5BJH7 314 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM71E1Q6IPT2 247 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OR2M7Q8NG81 312 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OR52P1PQ8NH57 321 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OR1L1Q8NH94 360 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OR2V1Q8NHB1 315 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 COQ8AQ8NI60 647 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 SLC35B4Q969S0 331 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OLFM3Q96PB7 478 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 RNF157Q96PX1 679 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 RTBDNQ9BSG5 229 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 HDHD3Q9BSH5 251 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF717Q9BY31 904 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 CDC42EP4Q9H3Q1 356 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 OR12D3Q9UGF7 316 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 HHLA2Q9UM44 414 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 PSG11Q9UQ72 335 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 HDGFL3Q9Y3E1 203 aa3.44□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV1OR15-9A0A0B4J2B8 117 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CCL15-CCL14A0A0B4J2E2 113 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 VPS37CA5D8V6 355 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 GOLGA6L4A6NEF3 574 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 RGS5O15539 181 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 TCF21O43680 179 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CD5LO43866 347 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 KCNK2O95069 426 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 OR5G3P0C626 314 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF688P0C7X2 276 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CD36P16671 472 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CXCL2P19875 107 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 IMPA1P29218 277 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 OR1E2P47887 323 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 MP68P56378 58 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 PSME3P61289 254 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 RAP1AP62834 184 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 IHHQ14623 411 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 SNRNP35Q16560 246 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CCL15Q16663 113 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ARHGAP11BQ3KRB8 267 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 TRMT12Q53H54 448 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 HENMT1Q5T8I9 393 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM222AQ5U5X8 452 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM78BQ5VT40 261 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 SPATA31B1PQ5VZV4 182 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ELP2Q6IA86 826 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 GLYATQ6IB77 296 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 CLEC20AQ6ZU45 233 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 MCFD2Q8NI22 146 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 SPPL2BQ8TCT7 592 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 BORCS7Q96B45 105 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ZHX1-C8orf76Q96EF9 292 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ACY3Q96HD9 319 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 DIRAS2Q96HU8 199 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 OR7D2Q96RA2 312 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF649Q9BS31 505 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 GGTLC1Q9BX51 225 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 SLC17A9Q9BYT1 436 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 PCBD2Q9H0N5 130 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 DCSTAMPQ9H295 470 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 HMG20AQ9NP66 347 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 RBM12B-AS1Q9P1G2 102 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM32AQ9Y421 112 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 YTHDF2Q9Y5A9 579 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 PTPRKQ15262 1439 aa3.43□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV5-51A0A0C4DH38 117 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV3-64DA0A0J9YX35 117 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 TMEM72A0PK05 275 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 PQLC2LA1A4F0 135 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 OR5H1A6NKK0 313 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 BTNL10A8MVZ5 291 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 K7EQS6 105 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 LGALS9O00182 355 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 KLRC4O43908 158 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 SS18L1O75177 396 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 YIF1AO95070 293 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV3-11P01762 117 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 ATP5G1P05496 136 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 MARCKSL1P49006 195 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 NUDT2P50583 147 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 SNAP25P60880 206 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 RAB2AP61019 212 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 IFITM2Q01629 132 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 CDK10Q15131 360 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 ELOCQ15369 112 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 SFXN4Q6P4A7 337 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 KRTAP5-5Q701N2 237 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 FA2HQ7L5A8 372 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 VN1R4Q7Z5H5 301 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 CALHM3Q86XJ0 350 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 ZBTB8OSQ8IWT0 167 aa3.42□□□□□ -1.86
CCDC88A-206ENST00000430086 LINC00337Q8N6G1 96 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms