RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 PCP4P48539 62 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 VASH2Q86V25 355 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 ZFP62Q8NB50 900 aaPredicted RBP12.18□□□□□ -0.46
LIG1-202ENST00000427526 OR5D13Q8NGL4 314 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 CD300LFQ8TDQ1 290 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 IL22RA2Q969J5 263 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 B4GALT7Q9UBV7 327 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 RBFOX3A6NFN3 312 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 SYNGR1O43759 233 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 PGLYRP1O75594 196 aaPredicted RBP12.18□□□□□ -0.46
LIG1-202ENST00000427526 ARG1P05089 322 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 EPHA1P21709 976 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 PLGLB1Q02325 96 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 KRBOX4Q5JUW0 171 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 FAM24BQ8N5W8 94 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 MRPL30Q8TCC3 161 aaKnown RBP12.18□□□□□ -0.46
LIG1-202ENST00000427526 MALSU1Q96EH3 234 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 POM121L2Q96KW2 1035 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 CALHM2Q9HA72 323 aa12.18□□□□□ -0.46
LIG1-202ENST00000427526 CDRT15L2A8MXV6 281 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 H0Y980 276 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 DYNLT3P51808 116 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 PAX9P55771 341 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 VAMP2P63027 116 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 BAXQ07812 192 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 C9orf152Q5JTZ5 239 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 YPEL4Q96NS1 127 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 TAAR3PQ9P1P4 343 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 TRBV6-6A0A0A6YYG2 114 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 HSPA12AO43301 675 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 CHST1O43916 411 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 CST7O76096 145 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 SP1P08047 785 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 RAB1AP62820 205 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 RNPS1Q15287 305 aaKnown RBP12.17□□□□□ -0.46
LIG1-202ENST00000427526 SOHLH1Q5JUK2 328 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 CMTM1Q8IZ96 169 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 SUMF2Q8NBJ7 301 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 HIPK2Q9H2X6 1198 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 RIMS4Q9H426 269 aaPredicted RBP12.17□□□□□ -0.46
LIG1-202ENST00000427526 DMXL1Q9Y485 3027 aa12.17□□□□□ -0.46
LIG1-202ENST00000427526 hCG_1809904A0A1W2PP81 198 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 A0A1W2PPE2 198 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 A0A1W2PR64 198 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 A0A1W2PRV1 198 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 BTBD17A6NE02 478 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 CEACAM1P13688 526 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 EIF2S3P41091 472 aaKnown RBP12.16□□□□□ -0.46
LIG1-202ENST00000427526 CASP6P55212 293 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 C3AR1Q16581 482 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 HIKESHIQ53FT3 197 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 OR2B11Q5JQS5 317 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 LINC00596Q86U02 117 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 OR5P3Q8WZ94 311 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 IGHV2-5P01817 119 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 MEOX1P50221 254 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 ZNF324BQ6AW86 544 aaPredicted RBP12.16□□□□□ -0.46
LIG1-202ENST00000427526 ZNF880Q6PDB4 577 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 MDS2Q8NDY4 140 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 NEK7Q8TDX7 302 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 GNPNAT1Q96EK6 184 aaPredicted RBP12.16□□□□□ -0.46
LIG1-202ENST00000427526 PLK3Q9H4B4 646 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 KIAA1456Q9P272 454 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 ASPMQ8IZT6 3477 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 CD300LBA8K4G0 201 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 NKX2-8O15522 239 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 TNFSF12O43508 249 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 LY86O95711 162 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 RD3LP0DJH9 198 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 F2RP25116 425 aa12.16□□□□□ -0.46
LIG1-202ENST00000427526 METTL1Q9UBP6 276 aaKnown RBP12.16□□□□□ -0.46
LIG1-202ENST00000427526 ZNF407Q9C0G0 2248 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 TRAV24A0A0B4J272 114 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 KIAA1324LA8MWY0 1029 aaPredicted RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 LILRA1O75019 489 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 RPS23P62266 143 aaKnown RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 TMPRSS7Q7RTY8 843 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 TMEM217Q8N7C4 229 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 ZNF488Q96MN9 340 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 PFDN5Q99471 154 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 SEBOXQ9HB31 216 aaPredicted RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 PUS1Q9Y606 427 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIG1-202ENST00000427526 CNOT1A5YKK6 2376 aaKnown RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 A0A0G2JRQ6 117 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 ZNF14P17017 642 aaPredicted RBP12.15□□□□□ -0.46
LIG1-202ENST00000427526 NDUFB7P17568 137 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 ARR3P36575 388 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 SPCS3P61009 180 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 RUNX1Q01196 453 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 ZNF154Q13106 437 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 ZNF295-AS1Q8N0V1 137 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 OR2W1Q9Y3N9 320 aa12.15□□□□□ -0.46
LIG1-202ENST00000427526 URB1O60287 2271 aaKnown RBP12.15□□□□□ -0.47
LIG1-202ENST00000427526 NXPH3O95157 252 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 SYNGR4O95473 234 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 SRP19P09132 144 aaKnown RBP12.14□□□□□ -0.47
LIG1-202ENST00000427526 CBR1P16152 277 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 CYB5R2Q6BCY4 276 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 ADAM5Q6NVV9 412 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms