RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 AQP5P55064 265 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 B2MP61769 119 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 BATF2Q8N1L9 274 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2M3Q8NG83 312 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2A1Q8NGT9 310 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR5AK3PQ8NH89 298 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 YIPF5Q969M3 257 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 USMG5Q96IX5 58 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ARHGDIGQ99819 225 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TM2D3Q9BRN9 247 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 KIFC1Q9BW19 673 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF224Q9NZL3 707 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SIP14410 1827 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 NUP214P35658 2090 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CBY3A6NI87 242 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 BOLA2-SMG1P6H3BVE0 249 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 K7EQM0 130 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 EIF3FO00303 357 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SOCS2O14508 198 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CRXO43186 299 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 LYPLA1O75608 230 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 INSP01308 110 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 IGLV2-14P01704 120 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 MIFP14174 115 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CDAP32320 146 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2B8PP59922 312 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ODF4Q2M2E3 257 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CCNJQ5T5M9 372 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM268Q5VZI3 342 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM71E1Q6IPT2 247 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 LINC00322Q6ZN03 302 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SSX6Q7RTT6 188 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM144Q7Z5S9 345 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 DHRSXQ8N5I4 330 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF645Q8N7E2 425 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 WDSUB1Q8N9V3 476 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM104Q8NE00 496 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR52N4Q8NGI2 321 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR51A7Q8NH64 312 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC35E1Q96K37 410 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 EIF5A2Q9GZV4 153 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 RNPEPL1Q9HAU8 725 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 VNN3Q9NY84 501 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM216Q9P0N5 145 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CD300AQ9UGN4 299 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SELENOKQ9Y6D0 94 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM14AQ9Y6G1 99 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TRRAPQ9Y4A5 3859 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 DOCK11Q5JSL3 2073 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CRYBG3Q68DQ2 2970 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TRAV8-3A0A0A6YYJ7 113 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 BORCS7-ASMTA0A0B4J1R7 106 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A0G2JMM0 328 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A1W2PPB8 328 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A1W2PRS3 328 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CD300LBA8K4G0 201 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 KIR3DP1A8MWS1 328 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 PRR32B1ATL7 298 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 K7N7A8 449 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 RHODO00212 210 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2J3O76001 311 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 S1PR2O95136 353 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 NRASP01111 189 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 PGA4P0DJD7 388 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 PGA3P0DJD8 388 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 UCHL3P15374 230 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 PTBP1P26599 531 aaKnown RBP eCLIP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 GDF5P43026 501 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SERPINB10P48595 397 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 VEGFCP49767 419 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 FGF8P55075 233 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 PAX9P55771 341 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TBCEQ15813 527 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 CORO6Q6QEF8 472 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SH2D6Q7Z4S9 175 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 LRRC28Q86X40 367 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SIAH3Q8IW03 269 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR8H2Q8N162 312 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR8G5Q8NG78 346 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 OR4K13Q8NH42 304 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 BORCS7Q96B45 105 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 HSH2DQ96JZ2 352 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM210BQ96KR6 192 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TEAD3Q99594 435 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ACER3Q9NUN7 267 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNRD1Q9P1U0 126 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TRAPPC4Q9Y296 219 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC25A15Q9Y619 301 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 U3KQA8 63 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ZFP92A6NM28 416 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ARPC3O15145 178 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 EEDO75530 441 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RPP14O95059 124 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 KCNK2O95069 426 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 IGFBP2P18065 325 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LAP3P28838 519 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SERPINB9P50453 376 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 PROK1P58294 105 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TIRAPP58753 221 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RAB2AP61019 212 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms